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Gene : TCP12 A. thaliana

Gene ID  ? AT1G68800
Brief Description  TCP domain protein 12  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? TCP domain protein 12 (TCP12); CONTAINS InterPro DOMAIN/s: Transcription factor, TCP (InterPro:IPR005333), CYC/TB1, R domain (InterPro:IPR017888), Transcription factor TCP subgroup (InterPro:IPR017887); BEST Arabidopsis thaliana protein match is: TCP family transcription factor (TAIR:AT1G67260.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Encodes a TCP transcription factor, closely related to teosinte branched1, arrests axillary bud development and prevents axillary bud outgrowth. Transcription level and mutant phenotype are weaker than its homolog BRC1 (At3G18550).  Source: TAIR, Jun 30, 2015.
Name  ? TCP domain protein 12
  • synonyms:
  • BRANCHED 2,
  • BRC2

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT1G68800 0.5kb upstream 0.5kb upstream 4740   true Chr1: 25845892-25850631
AT1G68800 0.5kb upstream 0.5kb upstream 500   false Chr1: 25850132-25850631
AT1G68800 0.5kb downstream 0.5kb downstream 4740   true Chr1: 25845392-25850131
AT1G68800 0.5kb downstream 0.5kb downstream 500   false Chr1: 25845392-25845891
AT1G68800 1.0kb upstream 1.0kb upstream 5240   true Chr1: 25845892-25851131
AT1G68800 1.0kb upstream 1.0kb upstream 1000   false Chr1: 25850132-25851131
AT1G68800 1.0kb downstream 1.0kb downstream 5240   true Chr1: 25844892-25850131
AT1G68800 1.0kb downstream 1.0kb downstream 1000   false Chr1: 25844892-25845891
AT1G68800 3.0kb upstream 3.0kb upstream 7240   true Chr1: 25845892-25853131
AT1G68800 3.0kb upstream 3.0kb upstream 3000   false Chr1: 25850132-25853131
AT1G68800 3.0kb downstream 3.0kb downstream 7240   true Chr1: 25842892-25850131
AT1G68800 3.0kb downstream 3.0kb downstream 3000   false Chr1: 25842892-25845891

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Data Source: KEGG

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9 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139