help  | faq  | software  | ARAPORT

Gene : CYCD1;1 A. thaliana

Gene ID  ? AT1G70210
Brief Description  CYCLIN D1;1  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? CYCLIN D1;1 (CYCD1;1); FUNCTIONS IN: cyclin-dependent protein kinase regulator activity; INVOLVED IN: G1 phase of mitotic cell cycle, regulation of cell cycle; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin D (InterPro:IPR015451), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: Cyclin D2;1 (TAIR:AT2G22490.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Encodes a D-type cyclin that physically interacts with CDC2A. Its expression is upregulated early during germination.  Source: TAIR, Jun 30, 2015.
Name  ? CYCLIN D1;1
  • synonyms:
  • ATCYCD1;1

Locus History Displayer

Publication Counts Displayer

1 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
WOX5 restrains cell division in the cells of the quiescent center, thereby establishing quiescence. In contrast, WOX5 and CYCD3;3/CYCD1;1 both promote cell proliferation in the nascent columella. 25127220


Sequence Feature Displayer

Gene Structure Displayer

J Browse Displayer

Overlapping Features Displayer

12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT1G70210 0.5kb upstream 0.5kb upstream 3952   true Chr1: 26439056-26443007
AT1G70210 0.5kb upstream 0.5kb upstream 500   false Chr1: 26439056-26439555
AT1G70210 0.5kb downstream 0.5kb downstream 3952   true Chr1: 26439556-26443507
AT1G70210 0.5kb downstream 0.5kb downstream 500   false Chr1: 26443008-26443507
AT1G70210 1.0kb upstream 1.0kb upstream 4452   true Chr1: 26438556-26443007
AT1G70210 1.0kb upstream 1.0kb upstream 1000   false Chr1: 26438556-26439555
AT1G70210 1.0kb downstream 1.0kb downstream 4452   true Chr1: 26439556-26444007
AT1G70210 1.0kb downstream 1.0kb downstream 1000   false Chr1: 26443008-26444007
AT1G70210 3.0kb upstream 3.0kb upstream 6452   true Chr1: 26436556-26443007
AT1G70210 3.0kb upstream 3.0kb upstream 3000   false Chr1: 26436556-26439555
AT1G70210 3.0kb downstream 3.0kb downstream 6452   true Chr1: 26439556-26446007
AT1G70210 3.0kb downstream 3.0kb downstream 3000   false Chr1: 26443008-26446007


Protein Displayer


Gene Ontology Displayer

0 Pathways

Data Source: KEGG

Gene --> Ontology term

Gene --> Pathways


Plant Ontology Displayer

Bar Efp Browser Displayer

Array Expression

RNA-seq Expression


Save / Export






Cytoscape Network Displayer


Homologue Displayer

Phytomine Ortholog Displayer


Alelle Table Displayer

Stock Gene Table Displayer



11 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from InterPro    
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139