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Gene : SEC6 A. thaliana

Gene ID  ? AT1G71820
Brief Description  SEC6  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? SEC6; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: pollen germination, pollen tube growth; LOCATED IN: cytosol, plasma membrane, exocyst; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Exocyst complex component Sec6 (InterPro:IPR010326).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Encodes a member of the exocyst complex gene family. The exocyst is a protein complex involved in tethering vesicles to the plasma membrane during regulated or polarized secretion.  Source: TAIR, Jun 30, 2015.

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2 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
SEC6 copurifies in a high molecular mass fraction of 900 kD, interacts with SEC8, and functions as a subunit in a exocyst complex that plays important roles in morphogenesis. 18492870
results demonstrated that, like KEULE, SEC6 plays a physiological role in cytokinesis, and the SEC6-KEULE interaction may serve as a novel molecular linkage between arriving vesicles and membrane fusion 23702595


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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT1G71820 0.5kb upstream 0.5kb upstream 8061   true Chr1: 27009064-27017124
AT1G71820 0.5kb upstream 0.5kb upstream 500   false Chr1: 27009064-27009563
AT1G71820 0.5kb downstream 0.5kb downstream 8061   true Chr1: 27009564-27017624
AT1G71820 0.5kb downstream 0.5kb downstream 500   false Chr1: 27017125-27017624
AT1G71820 1.0kb upstream 1.0kb upstream 8561   true Chr1: 27008564-27017124
AT1G71820 1.0kb upstream 1.0kb upstream 1000   false Chr1: 27008564-27009563
AT1G71820 1.0kb downstream 1.0kb downstream 8561   true Chr1: 27009564-27018124
AT1G71820 1.0kb downstream 1.0kb downstream 1000   false Chr1: 27017125-27018124
AT1G71820 3.0kb upstream 3.0kb upstream 10561   true Chr1: 27006564-27017124
AT1G71820 3.0kb upstream 3.0kb upstream 3000   false Chr1: 27006564-27009563
AT1G71820 3.0kb downstream 3.0kb downstream 10561   true Chr1: 27009564-27020124
AT1G71820 3.0kb downstream 3.0kb downstream 3000   false Chr1: 27017125-27020124


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0 Pathways

Data Source: KEGG

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11 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from InterPro    
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139