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Gene : ALAAT2 A. thaliana

Gene ID  ? AT1G72330
Brief Description  alanine aminotransferase 2  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? alanine aminotransferase 2 (ALAAT2); FUNCTIONS IN: copper ion binding, L-alanine:2-oxoglutarate aminotransferase activity, ATP binding; INVOLVED IN: glycolysis, biosynthetic process, L-alanine biosynthetic process from pyruvate, L-alanine catabolic process, by transamination; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferase, class I/classII (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: alanine aminotransferas (TAIR:AT1G17290.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Encodes for alanine aminotransferase ALAAT2.  Source: TAIR, Jun 30, 2015.
Name  ? alanine aminotransferase 2

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1 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
ALAAT1 and ALAAT2 link mitochondrial glycolate oxidation to the major photorespiratory pathway. 22268146

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT1G72330 0.5kb upstream 0.5kb upstream 3905   true Chr1: 27232918-27236822
AT1G72330 0.5kb upstream 0.5kb upstream 500   false Chr1: 27232918-27233417
AT1G72330 0.5kb downstream 0.5kb downstream 3905   true Chr1: 27233418-27237322
AT1G72330 0.5kb downstream 0.5kb downstream 500   false Chr1: 27236823-27237322
AT1G72330 1.0kb upstream 1.0kb upstream 4405   true Chr1: 27232418-27236822
AT1G72330 1.0kb upstream 1.0kb upstream 1000   false Chr1: 27232418-27233417
AT1G72330 1.0kb downstream 1.0kb downstream 4405   true Chr1: 27233418-27237822
AT1G72330 1.0kb downstream 1.0kb downstream 1000   false Chr1: 27236823-27237822
AT1G72330 3.0kb upstream 3.0kb upstream 6405   true Chr1: 27230418-27236822
AT1G72330 3.0kb upstream 3.0kb upstream 3000   false Chr1: 27230418-27233417
AT1G72330 3.0kb downstream 3.0kb downstream 6405   true Chr1: 27233418-27239822
AT1G72330 3.0kb downstream 3.0kb downstream 3000   false Chr1: 27236823-27239822

Proteins

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Function

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7 Pathways

Data Source: KEGG

Identifier Name
01100 Metabolic pathways
01200 Carbon metabolism
01230 Biosynthesis of amino acids
00710 Carbon fixation in photosynthetic organisms
01210 2-Oxocarboxylic acid metabolism
00250 Alanine, aspartate and glutamate metabolism
00220 Arginine biosynthesis

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Expression

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Interactions

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Homology

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Stocks

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10 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016