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Gene : AT1G72550 A. thaliana

Gene ID  ? AT1G72550
Brief Description  tRNA synthetase beta subunit family protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? tRNA synthetase beta subunit family protein; FUNCTIONS IN: phenylalanine-tRNA ligase activity, RNA binding, magnesium ion binding, nucleotide binding, ATP binding; INVOLVED IN: phenylalanyl-tRNA aminoacylation, translation; LOCATED IN: phenylalanine-tRNA ligase complex, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Putative DNA binding domain (InterPro:IPR009061), tRNA synthetase, B5 (InterPro:IPR005147), Phenylalanyl-tRNA synthetase, class IIc, beta subunit, archae/euk cytosolic (InterPro:IPR004531), B3/B4 tRNA-binding domain (InterPro:IPR005146).  Source: TAIR, Jun 30, 2015.

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT1G72550 0.5kb upstream 0.5kb upstream 4925   true Chr1: 27319688-27324612
AT1G72550 0.5kb upstream 0.5kb upstream 500   false Chr1: 27324113-27324612
AT1G72550 0.5kb downstream 0.5kb downstream 4925   true Chr1: 27319188-27324112
AT1G72550 0.5kb downstream 0.5kb downstream 500   false Chr1: 27319188-27319687
AT1G72550 1.0kb upstream 1.0kb upstream 5425   true Chr1: 27319688-27325112
AT1G72550 1.0kb upstream 1.0kb upstream 1000   false Chr1: 27324113-27325112
AT1G72550 1.0kb downstream 1.0kb downstream 5425   true Chr1: 27318688-27324112
AT1G72550 1.0kb downstream 1.0kb downstream 1000   false Chr1: 27318688-27319687
AT1G72550 3.0kb upstream 3.0kb upstream 7425   true Chr1: 27319688-27327112
AT1G72550 3.0kb upstream 3.0kb upstream 3000   false Chr1: 27324113-27327112
AT1G72550 3.0kb downstream 3.0kb downstream 7425   true Chr1: 27316688-27324112
AT1G72550 3.0kb downstream 3.0kb downstream 3000   false Chr1: 27316688-27319687

Proteins

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Function

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1 Pathways

Data Source: KEGG

Identifier Name
00970 Aminoacyl-tRNA biosynthesis

Gene --> Ontology term

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Expression

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10 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from InterPro    
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139