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Gene : GER1 A. thaliana

Gene ID  ? AT1G72610
Brief Description  germin-like protein 1  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? germin-like protein 1 (GER1); INVOLVED IN: biological_process unknown; LOCATED IN: extracellular matrix; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), Germin (InterPro:IPR001929), RmlC-like jelly roll fold (InterPro:IPR014710), Germin, manganese binding site (InterPro:IPR019780); BEST Arabidopsis thaliana protein match is: germin 3 (TAIR:AT5G20630.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? germin-like protein (GLP1)  Source: TAIR, Jun 30, 2015.
Name  ? germin-like protein 1
  • synonyms:
  • GLP1,
  • GERMIN-LIKE PROTEIN 1,
  • ATGER1,
  • A. THALIANA GERMIN-LIKE PROTEIN 1

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT1G72610 0.5kb upstream 0.5kb upstream 1431   true Chr1: 27339114-27340544
AT1G72610 0.5kb upstream 0.5kb upstream 500   false Chr1: 27340045-27340544
AT1G72610 0.5kb downstream 0.5kb downstream 1431   true Chr1: 27338614-27340044
AT1G72610 0.5kb downstream 0.5kb downstream 500   false Chr1: 27338614-27339113
AT1G72610 1.0kb upstream 1.0kb upstream 1931   true Chr1: 27339114-27341044
AT1G72610 1.0kb upstream 1.0kb upstream 1000   false Chr1: 27340045-27341044
AT1G72610 1.0kb downstream 1.0kb downstream 1931   true Chr1: 27338114-27340044
AT1G72610 1.0kb downstream 1.0kb downstream 1000   false Chr1: 27338114-27339113
AT1G72610 3.0kb upstream 3.0kb upstream 3931   true Chr1: 27339114-27343044
AT1G72610 3.0kb upstream 3.0kb upstream 3000   false Chr1: 27340045-27343044
AT1G72610 3.0kb downstream 3.0kb downstream 3931   true Chr1: 27336114-27340044
AT1G72610 3.0kb downstream 3.0kb downstream 3000   false Chr1: 27336114-27339113

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0 Pathways

Data Source: KEGG

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8 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TAIR GO annotations assigned by TAIR 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0