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Gene : AT1G73050 A. thaliana

Gene ID  ? AT1G73050
Brief Description  Glucose-methanol-choline (GMC) oxidoreductase family protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? Glucose-methanol-choline (GMC) oxidoreductase family protein; FUNCTIONS IN: oxidoreductase activity, acting on CH-OH group of donors, FAD binding; INVOLVED IN: cyanide biosynthetic process, defense response; LOCATED IN: endomembrane system; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glucose-methanol-choline oxidoreductase, N-terminal (InterPro:IPR000172), Glucose-methanol-choline oxidoreductase (InterPro:IPR012132), Glucose-methanol-choline oxidoreductase, C-terminal (InterPro:IPR007867); BEST Arabidopsis thaliana protein match is: Glucose-methanol-choline (GMC) oxidoreductase family protein (TAIR:AT1G12570.1).  Source: TAIR, Jun 30, 2015.

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI


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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT1G73050 0.5kb upstream 0.5kb upstream 2470   true Chr1: 27476565-27479034
AT1G73050 0.5kb upstream 0.5kb upstream 500   false Chr1: 27478535-27479034
AT1G73050 0.5kb downstream 0.5kb downstream 2470   true Chr1: 27476065-27478534
AT1G73050 0.5kb downstream 0.5kb downstream 500   false Chr1: 27476065-27476564
AT1G73050 1.0kb upstream 1.0kb upstream 2970   true Chr1: 27476565-27479534
AT1G73050 1.0kb upstream 1.0kb upstream 1000   false Chr1: 27478535-27479534
AT1G73050 1.0kb downstream 1.0kb downstream 2970   true Chr1: 27475565-27478534
AT1G73050 1.0kb downstream 1.0kb downstream 1000   false Chr1: 27475565-27476564
AT1G73050 3.0kb upstream 3.0kb upstream 4970   true Chr1: 27476565-27481534
AT1G73050 3.0kb upstream 3.0kb upstream 3000   false Chr1: 27478535-27481534
AT1G73050 3.0kb downstream 3.0kb downstream 4970   true Chr1: 27473565-27478534
AT1G73050 3.0kb downstream 3.0kb downstream 3000   false Chr1: 27473565-27476564


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2 Pathways

Data Source: KEGG

Identifier Name
01110 Biosynthesis of secondary metabolites
00460 Cyanoamino acid metabolism

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9 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from InterPro    
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0