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Gene : AT1G75230 A. thaliana

Gene ID  ? AT1G75230
Brief Description  DNA glycosylase superfamily protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? DNA glycosylase superfamily protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: DNA repair, base-excision repair; LOCATED IN: nucleus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257), HhH-GPD domain (InterPro:IPR003265); BEST Arabidopsis thaliana protein match is: DNA glycosylase superfamily protein (TAIR:AT1G19480.1).  Source: TAIR, Jun 30, 2015.

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT1G75230 0.5kb upstream 0.5kb upstream 3705   true Chr1: 28233586-28237290
AT1G75230 0.5kb upstream 0.5kb upstream 500   false Chr1: 28233586-28234085
AT1G75230 0.5kb downstream 0.5kb downstream 3705   true Chr1: 28234086-28237790
AT1G75230 0.5kb downstream 0.5kb downstream 500   false Chr1: 28237291-28237790
AT1G75230 1.0kb upstream 1.0kb upstream 4205   true Chr1: 28233086-28237290
AT1G75230 1.0kb upstream 1.0kb upstream 1000   false Chr1: 28233086-28234085
AT1G75230 1.0kb downstream 1.0kb downstream 4205   true Chr1: 28234086-28238290
AT1G75230 1.0kb downstream 1.0kb downstream 1000   false Chr1: 28237291-28238290
AT1G75230 3.0kb upstream 3.0kb upstream 6205   true Chr1: 28231086-28237290
AT1G75230 3.0kb upstream 3.0kb upstream 3000   false Chr1: 28231086-28234085
AT1G75230 3.0kb downstream 3.0kb downstream 6205   true Chr1: 28234086-28240290
AT1G75230 3.0kb downstream 3.0kb downstream 3000   false Chr1: 28237291-28240290

Proteins

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Function

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1 Pathways

Data Source: KEGG

Identifier Name
03410 Base excision repair

Gene --> Ontology term

Gene --> Pathways


Expression

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Interactions

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10 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from InterPro    
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
TrEMBL data set Computationally analysed records, enriched with automatic annotation 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016