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Gene : CPK29 A. thaliana

Gene ID  ? AT1G76040
Brief Description  calcium-dependent protein kinase 29  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? calcium-dependent protein kinase 29 (CPK29); FUNCTIONS IN: calmodulin-dependent protein kinase activity, protein kinase activity, kinase activity, calcium ion binding, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: nucleus, plasma membrane, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249), Calcium-dependent protein kinase (InterPro:IPR020642), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: calcium-dependent protein kinase 15 (TAIR:AT4G21940.2).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? member of Calcium Dependent Protein Kinase  Source: TAIR, Jun 30, 2015.
Name  ? calcium-dependent protein kinase 29

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT1G76040 0.5kb upstream 0.5kb upstream 3615   true Chr1: 28537093-28540707
AT1G76040 0.5kb upstream 0.5kb upstream 500   false Chr1: 28537093-28537592
AT1G76040 0.5kb downstream 0.5kb downstream 3615   true Chr1: 28537593-28541207
AT1G76040 0.5kb downstream 0.5kb downstream 500   false Chr1: 28540708-28541207
AT1G76040 1.0kb upstream 1.0kb upstream 4115   true Chr1: 28536593-28540707
AT1G76040 1.0kb upstream 1.0kb upstream 1000   false Chr1: 28536593-28537592
AT1G76040 1.0kb downstream 1.0kb downstream 4115   true Chr1: 28537593-28541707
AT1G76040 1.0kb downstream 1.0kb downstream 1000   false Chr1: 28540708-28541707
AT1G76040 3.0kb upstream 3.0kb upstream 6115   true Chr1: 28534593-28540707
AT1G76040 3.0kb upstream 3.0kb upstream 3000   false Chr1: 28534593-28537592
AT1G76040 3.0kb downstream 3.0kb downstream 6115   true Chr1: 28537593-28543707
AT1G76040 3.0kb downstream 3.0kb downstream 3000   false Chr1: 28540708-28543707

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1 Pathways

Data Source: KEGG

Identifier Name
04626 Plant-pathogen interaction

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9 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from GOC GO annotations assigned by the GO Consortium 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
TrEMBL data set Computationally analysed records, enriched with automatic annotation 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0