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Gene : SOB3 A. thaliana

Gene ID  ? AT1G76500
Brief Description  Putative AT-hook DNA-binding family protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? SUPPRESSOR OF PHYB-4#3 (SOB3); FUNCTIONS IN: DNA binding; INVOLVED IN: photomorphogenesis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175), AT hook, DNA-binding motif (InterPro:IPR017956), Predicted AT-hook DNA-binding (InterPro:IPR014476); BEST Arabidopsis thaliana protein match is: Predicted AT-hook DNA-binding family protein (TAIR:AT1G20900.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Encodes an AT hook domain containing protein. Identified in a screen of activation tagged lines that suppress the long-hypocotyl phenotype of a weak phyB allele. Affects cell elongation in the hypocotyl and leaves.Acts redundantly with ESC to modulate hypocotyl growth inhibition in response to light  Source: TAIR, Jun 30, 2015.
Name  ? SUPPRESSOR OF PHYB-4#3
  • synonyms:
  • AT-hook motif nuclear-localized protein 29,
  • AHL29

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1 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
These data indicate that SOB3 and ESC act redundantly to modulate hypocotyl growth inhibition in response to light.[SOB3] 18088311

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT1G76500 0.5kb upstream 0.5kb upstream 2229   true Chr1: 28704463-28706691
AT1G76500 0.5kb upstream 0.5kb upstream 500   false Chr1: 28704463-28704962
AT1G76500 0.5kb downstream 0.5kb downstream 2229   true Chr1: 28704963-28707191
AT1G76500 0.5kb downstream 0.5kb downstream 500   false Chr1: 28706692-28707191
AT1G76500 1.0kb upstream 1.0kb upstream 2729   true Chr1: 28703963-28706691
AT1G76500 1.0kb upstream 1.0kb upstream 1000   false Chr1: 28703963-28704962
AT1G76500 1.0kb downstream 1.0kb downstream 2729   true Chr1: 28704963-28707691
AT1G76500 1.0kb downstream 1.0kb downstream 1000   false Chr1: 28706692-28707691
AT1G76500 3.0kb upstream 3.0kb upstream 4729   true Chr1: 28701963-28706691
AT1G76500 3.0kb upstream 3.0kb upstream 3000   false Chr1: 28701963-28704962
AT1G76500 3.0kb downstream 3.0kb downstream 4729   true Chr1: 28704963-28709691
AT1G76500 3.0kb downstream 3.0kb downstream 3000   false Chr1: 28706692-28709691

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0 Pathways

Data Source: KEGG

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10 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TIGR GO annotations assigned by TIGR Arabidopsis annotation effort 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139