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Gene : AT1G80040 A. thaliana

Gene ID  ? AT1G80040
Brief Description  ubiquitin system component Cue  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin system component Cue (InterPro:IPR003892); BEST Arabidopsis thaliana protein match is: Ubiquitin system component Cue protein (TAIR:AT5G32440.1).  Source: TAIR, Jun 30, 2015.

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT1G80040 0.5kb upstream 0.5kb upstream 2726   true Chr1: 30109059-30111784
AT1G80040 0.5kb upstream 0.5kb upstream 500   false Chr1: 30111285-30111784
AT1G80040 0.5kb downstream 0.5kb downstream 2726   true Chr1: 30108559-30111284
AT1G80040 0.5kb downstream 0.5kb downstream 500   false Chr1: 30108559-30109058
AT1G80040 1.0kb upstream 1.0kb upstream 3226   true Chr1: 30109059-30112284
AT1G80040 1.0kb upstream 1.0kb upstream 1000   false Chr1: 30111285-30112284
AT1G80040 1.0kb downstream 1.0kb downstream 3226   true Chr1: 30108059-30111284
AT1G80040 1.0kb downstream 1.0kb downstream 1000   false Chr1: 30108059-30109058
AT1G80040 3.0kb upstream 3.0kb upstream 5226   true Chr1: 30109059-30114284
AT1G80040 3.0kb upstream 3.0kb upstream 3000   false Chr1: 30111285-30114284
AT1G80040 3.0kb downstream 3.0kb downstream 5226   true Chr1: 30106059-30111284
AT1G80040 3.0kb downstream 3.0kb downstream 3000   false Chr1: 30106059-30109058

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0 Pathways

Data Source: KEGG

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Expression

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10 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TIGR GO annotations assigned by TIGR Arabidopsis annotation effort 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
TrEMBL data set Computationally analysed records, enriched with automatic annotation 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139