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Gene : AT2G02160 A. thaliana

Gene ID  ? AT2G02160
Brief Description  CCCH-type zinc finger family protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? CCCH-type zinc finger family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571).  Source: TAIR, Jun 30, 2015.

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT2G02160 0.5kb upstream 0.5kb upstream 3546   true Chr2: 553086-556631
AT2G02160 0.5kb upstream 0.5kb upstream 500   false Chr2: 556132-556631
AT2G02160 0.5kb downstream 0.5kb downstream 3546   true Chr2: 552586-556131
AT2G02160 0.5kb downstream 0.5kb downstream 500   false Chr2: 552586-553085
AT2G02160 1.0kb upstream 1.0kb upstream 4046   true Chr2: 553086-557131
AT2G02160 1.0kb upstream 1.0kb upstream 1000   false Chr2: 556132-557131
AT2G02160 1.0kb downstream 1.0kb downstream 4046   true Chr2: 552086-556131
AT2G02160 1.0kb downstream 1.0kb downstream 1000   false Chr2: 552086-553085
AT2G02160 3.0kb upstream 3.0kb upstream 6046   true Chr2: 553086-559131
AT2G02160 3.0kb upstream 3.0kb upstream 3000   false Chr2: 556132-559131
AT2G02160 3.0kb downstream 3.0kb downstream 6046   true Chr2: 550086-556131
AT2G02160 3.0kb downstream 3.0kb downstream 3000   false Chr2: 550086-553085

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0 Pathways

Data Source: KEGG

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8 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TIGR GO annotations assigned by TIGR Arabidopsis annotation effort 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0