help  | faq  | software  | ARAPORT

Gene : AT2G02870 A. thaliana

Gene ID  ? AT2G02870
Brief Description  Galactose oxidase/kelch repeat superfamily protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT1G14330.1).  Source: TAIR, Jun 30, 2015.

Locus History Displayer

Publication Counts Displayer

0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

Sequence Feature Displayer

Gene Structure Displayer

J Browse Displayer

Overlapping Features Displayer

12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT2G02870 0.5kb upstream 0.5kb upstream 3098   true Chr2: 837301-840398
AT2G02870 0.5kb upstream 0.5kb upstream 500   false Chr2: 837301-837800
AT2G02870 0.5kb downstream 0.5kb downstream 3098   true Chr2: 837801-840898
AT2G02870 0.5kb downstream 0.5kb downstream 500   false Chr2: 840399-840898
AT2G02870 1.0kb upstream 1.0kb upstream 3598   true Chr2: 836801-840398
AT2G02870 1.0kb upstream 1.0kb upstream 1000   false Chr2: 836801-837800
AT2G02870 1.0kb downstream 1.0kb downstream 3598   true Chr2: 837801-841398
AT2G02870 1.0kb downstream 1.0kb downstream 1000   false Chr2: 840399-841398
AT2G02870 3.0kb upstream 3.0kb upstream 5598   true Chr2: 834801-840398
AT2G02870 3.0kb upstream 3.0kb upstream 3000   false Chr2: 834801-837800
AT2G02870 3.0kb downstream 3.0kb downstream 5598   true Chr2: 837801-843398
AT2G02870 3.0kb downstream 3.0kb downstream 3000   false Chr2: 840399-843398

Proteins

Protein Displayer


Function

Gene Ontology Displayer

0 Pathways

Data Source: KEGG

Gene --> Ontology term

Gene --> Pathways


Expression

Plant Ontology Displayer

Bar Efp Browser Displayer

Array Expression

RNA-seq Expression

Co-expression

Save / Export

 

 

 

 



Interactions

Cytoscape Network Displayer


Homology

Homologue Displayer

Phytomine Ortholog Displayer


Stocks

Alelle Table Displayer

Stock Gene Table Displayer


 

Other

10 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TIGR GO annotations assigned by TIGR Arabidopsis annotation effort 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139