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Gene : SEP4 A. thaliana

Gene ID  ? AT2G03710
Brief Description  K-box region and MADS-box transcription factor family protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? SEPALLATA 4 (SEP4); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: K-box region and MADS-box transcription factor family protein (TAIR:AT5G15800.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? This gene belongs to the family of SEP genes. It is involved in the development of sepals, petals, stamens and carpels. Additionally, it plays a central role in the determination of flower meristem and organ identity.  Source: TAIR, Jun 30, 2015.
Name  ? SEPALLATA 4
  • synonyms:
  • AGAMOUS-like 3,
  • AGL3

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1 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
SEP4 contributes to the development of petals, stamens, carpels, sepals and plays an important role in meristem identity. [SEPALLATA4] [SEP4] 15530395

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT2G03710 0.5kb upstream 0.5kb upstream 3110   true Chr2: 1128729-1131838
AT2G03710 0.5kb upstream 0.5kb upstream 500   false Chr2: 1128729-1129228
AT2G03710 0.5kb downstream 0.5kb downstream 3110   true Chr2: 1129229-1132338
AT2G03710 0.5kb downstream 0.5kb downstream 500   false Chr2: 1131839-1132338
AT2G03710 1.0kb upstream 1.0kb upstream 3610   true Chr2: 1128229-1131838
AT2G03710 1.0kb upstream 1.0kb upstream 1000   false Chr2: 1128229-1129228
AT2G03710 1.0kb downstream 1.0kb downstream 3610   true Chr2: 1129229-1132838
AT2G03710 1.0kb downstream 1.0kb downstream 1000   false Chr2: 1131839-1132838
AT2G03710 3.0kb upstream 3.0kb upstream 5610   true Chr2: 1126229-1131838
AT2G03710 3.0kb upstream 3.0kb upstream 3000   false Chr2: 1126229-1129228
AT2G03710 3.0kb downstream 3.0kb downstream 5610   true Chr2: 1129229-1134838
AT2G03710 3.0kb downstream 3.0kb downstream 3000   false Chr2: 1131839-1134838

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0 Pathways

Data Source: KEGG

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Expression

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11 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139