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Gene : AT2G05320 A. thaliana

Gene ID  ? AT2G05320
Brief Description  beta-1,2-N-acetylglucosaminyltransferase II  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? beta-1,2-N-acetylglucosaminyltransferase II; FUNCTIONS IN: acetylglucosaminyltransferase activity, alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity; INVOLVED IN: oligosaccharide biosynthetic process; LOCATED IN: Golgi stack, integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: N-acetylglucosaminyltransferase II (InterPro:IPR007754).  Source: TAIR, Jun 30, 2015.

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT2G05320 0.5kb upstream 0.5kb upstream 2425   true Chr2: 1935040-1937464
AT2G05320 0.5kb upstream 0.5kb upstream 500   false Chr2: 1935040-1935539
AT2G05320 0.5kb downstream 0.5kb downstream 2425   true Chr2: 1935540-1937964
AT2G05320 0.5kb downstream 0.5kb downstream 500   false Chr2: 1937465-1937964
AT2G05320 1.0kb upstream 1.0kb upstream 2925   true Chr2: 1934540-1937464
AT2G05320 1.0kb upstream 1.0kb upstream 1000   false Chr2: 1934540-1935539
AT2G05320 1.0kb downstream 1.0kb downstream 2925   true Chr2: 1935540-1938464
AT2G05320 1.0kb downstream 1.0kb downstream 1000   false Chr2: 1937465-1938464
AT2G05320 3.0kb upstream 3.0kb upstream 4925   true Chr2: 1932540-1937464
AT2G05320 3.0kb upstream 3.0kb upstream 3000   false Chr2: 1932540-1935539
AT2G05320 3.0kb downstream 3.0kb downstream 4925   true Chr2: 1935540-1940464
AT2G05320 3.0kb downstream 3.0kb downstream 3000   false Chr2: 1937465-1940464

Proteins

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2 Pathways

Data Source: KEGG

Identifier Name
01100 Metabolic pathways
00510 N-Glycan biosynthesis

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Expression

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Interactions

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9 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TAIR GO annotations assigned by TAIR 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
TrEMBL data set Computationally analysed records, enriched with automatic annotation 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0