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Gene : CALS5 A. thaliana

Gene ID  ? AT2G13680
Brief Description  callose synthase 5  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? callose synthase 5 (CALS5); FUNCTIONS IN: 1,3-beta-glucan synthase activity; INVOLVED IN: in 6 processes; LOCATED IN: 1,3-beta-glucan synthase complex, membrane; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 48 (InterPro:IPR003440), Protein of unknown function DUF605 (InterPro:IPR006745); BEST Arabidopsis thaliana protein match is: glucan synthase-like 12 (TAIR:AT5G13000.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Responsible for the synthesis of callose deposited at the primary cell wall of meiocytes, tetrads and microspores. Required for exine formation during microgametogenesis and for pollen viability. Highest expression in meiocytes, tetrads, microspores and mature pollen.  Source: TAIR, Jun 30, 2015.
Name  ? callose synthase 5
  • synonyms:
  • GLS2,
  • ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2,
  • GLUCAN SYNTHASE-LIKE 2,
  • ATGSL02

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3 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
CalS5 encodes a callose synthase which is responsible for the synthesis of callose deposited at the primary cell wall of meiocytes, tetrads and microspores, and the expression of this gene is essential for exine formation in pollen wall. [CalS5] 15842618
When expressed in cultured tobacco BY-2 cells, CalS5 was found to be present in the plasma membrane and the Golgi-related endomembranes, and resulted in callose accumulation in the cell wall and altered cell wall permeability. 22195570
Cyclin-dependent kinase-G1 regulates pre-mRNA splicing of CalS5. 23404887

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT2G13680 0.5kb upstream 0.5kb upstream 12562   true Chr2: 5693881-5706442
AT2G13680 0.5kb upstream 0.5kb upstream 500   false Chr2: 5693881-5694380
AT2G13680 0.5kb downstream 0.5kb downstream 12562   true Chr2: 5694381-5706942
AT2G13680 0.5kb downstream 0.5kb downstream 500   false Chr2: 5706443-5706942
AT2G13680 1.0kb upstream 1.0kb upstream 13062   true Chr2: 5693381-5706442
AT2G13680 1.0kb upstream 1.0kb upstream 1000   false Chr2: 5693381-5694380
AT2G13680 1.0kb downstream 1.0kb downstream 13062   true Chr2: 5694381-5707442
AT2G13680 1.0kb downstream 1.0kb downstream 1000   false Chr2: 5706443-5707442
AT2G13680 3.0kb upstream 3.0kb upstream 15062   true Chr2: 5691381-5706442
AT2G13680 3.0kb upstream 3.0kb upstream 3000   false Chr2: 5691381-5694380
AT2G13680 3.0kb downstream 3.0kb downstream 15062   true Chr2: 5694381-5709442
AT2G13680 3.0kb downstream 3.0kb downstream 3000   false Chr2: 5706443-5709442

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0 Pathways

Data Source: KEGG

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9 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from InterPro    
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016