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Gene : SERK4 A. thaliana

Gene ID  ? AT2G13790
Brief Description  somatic embryogenesis receptor-like kinase 4  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? somatic embryogenesis receptor-like kinase 4 (SERK4); FUNCTIONS IN: protein kinase activity, transmembrane receptor protein serine/threonine kinase activity; INVOLVED IN: in 6 processes; LOCATED IN: endomembrane system; EXPRESSED IN: rosette leaf, cauline leaf, fruit, root, flower; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: somatic embryogenesis receptor-like kinase 5 (TAIR:AT2G13800.1).  Source: TAIR, Jun 30, 2015.
Name  ? somatic embryogenesis receptor-like kinase 4
  • synonyms:
  • BAK7,
  • ATSERK4,
  • BAK1-LIKE 1,
  • BKK1,

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5 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
study demonstrates that BAK1 and BKK1 (AtSERK4) have dual physiological roles: positively regulating a brassinosteroid (BR)-dependent plant growth pathway, and negatively regulating a BR-independent cell-death pathway 17600708
BAK7 (SERK4) is a component of the brassinosteroid signaling pathway, with varying degrees of genetic redundancy with BAK1. It affects plant growth via BL-independent pathways in vivo. 20108170
Data reveal that PAMP-triggered immunity (PTI) relies on ligand-induced recruitment of SERK3/4 and provides insight into the early PTI signaling events underlying this important layer of plant innate immunity. 21693696
serk1 bak1 bkk1 triple mutant exhibited drastically reduced expression of a number of genes critical to polar auxin transport, cell cycle, endodermis development and root meristem differentiatio 22525267
SERK3 and SERK4 have diverged from the original SERK protein in both their extracellular and cytoplasmic domains. 25864910


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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT2G13790 0.5kb upstream 0.5kb upstream 5742   true Chr2: 5741092-5746833
AT2G13790 0.5kb upstream 0.5kb upstream 500   false Chr2: 5741092-5741591
AT2G13790 0.5kb downstream 0.5kb downstream 5742   true Chr2: 5741592-5747333
AT2G13790 0.5kb downstream 0.5kb downstream 500   false Chr2: 5746834-5747333
AT2G13790 1.0kb upstream 1.0kb upstream 6242   true Chr2: 5740592-5746833
AT2G13790 1.0kb upstream 1.0kb upstream 1000   false Chr2: 5740592-5741591
AT2G13790 1.0kb downstream 1.0kb downstream 6242   true Chr2: 5741592-5747833
AT2G13790 1.0kb downstream 1.0kb downstream 1000   false Chr2: 5746834-5747833
AT2G13790 3.0kb upstream 3.0kb upstream 8242   true Chr2: 5738592-5746833
AT2G13790 3.0kb upstream 3.0kb upstream 3000   false Chr2: 5738592-5741591
AT2G13790 3.0kb downstream 3.0kb downstream 8242   true Chr2: 5741592-5749833
AT2G13790 3.0kb downstream 3.0kb downstream 3000   false Chr2: 5746834-5749833


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1 Pathways

Data Source: KEGG

Identifier Name
04626 Plant-pathogen interaction

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11 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TIGR GO annotations assigned by TIGR Arabidopsis annotation effort 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016