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Gene : AGL44 A. thaliana

Gene ID  ? AT2G14210
Brief Description  AGAMOUS-like 44  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? AGAMOUS-like 44 (AGL44); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to nutrient, lateral root development; LOCATED IN: nucleus; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 21 (TAIR:AT4G37940.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? MADS box gene, transcription factor  Source: TAIR, Jun 30, 2015.
Name  ? AGAMOUS-like 44
  • synonyms:
  • ARABIDOPSIS NITRATE REGULATED 1,
  • ANR1

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3 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
ANR1 expression in roots of hydroponically grown Arabidopsis plants was specifically regulated by changes in the N supply, being induced by N deprivation and rapidly repressed by N re-supply. 16021502
There is evidence for a nitrate-dependent component of the ANR1 signalling pathway. 16339770
ANR1 overexpression accelerates early seedling development. 22523192

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT2G14210 0.5kb upstream 0.5kb upstream 5806   true Chr2: 6018058-6023863
AT2G14210 0.5kb upstream 0.5kb upstream 500   false Chr2: 6018058-6018557
AT2G14210 0.5kb downstream 0.5kb downstream 5806   true Chr2: 6018558-6024363
AT2G14210 0.5kb downstream 0.5kb downstream 500   false Chr2: 6023864-6024363
AT2G14210 1.0kb upstream 1.0kb upstream 6306   true Chr2: 6017558-6023863
AT2G14210 1.0kb upstream 1.0kb upstream 1000   false Chr2: 6017558-6018557
AT2G14210 1.0kb downstream 1.0kb downstream 6306   true Chr2: 6018558-6024863
AT2G14210 1.0kb downstream 1.0kb downstream 1000   false Chr2: 6023864-6024863
AT2G14210 3.0kb upstream 3.0kb upstream 8306   true Chr2: 6015558-6023863
AT2G14210 3.0kb upstream 3.0kb upstream 3000   false Chr2: 6015558-6018557
AT2G14210 3.0kb downstream 3.0kb downstream 8306   true Chr2: 6018558-6026863
AT2G14210 3.0kb downstream 3.0kb downstream 3000   false Chr2: 6023864-6026863

Proteins

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0 Pathways

Data Source: KEGG

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Expression

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Interactions

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Homology

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11 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139