help  | faq  | software  | ARAPORT

Gene : AT2G16530 A. thaliana

Gene ID  ? AT2G16530
Brief Description  3-oxo-5-alpha-steroid 4-dehydrogenase family protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? 3-oxo-5-alpha-steroid 4-dehydrogenase family protein; FUNCTIONS IN: oxidoreductase activity, acting on the CH-CH group of donors, 3-oxo-5-alpha-steroid 4-dehydrogenase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: callus; CONTAINS InterPro DOMAIN/s: 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal (InterPro:IPR001104); BEST Arabidopsis thaliana protein match is: 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (TAIR:AT1G72590.1).  Source: TAIR, Jun 30, 2015.
  • synonyms:
  • Polyprenol reductase 2,
  • PPRD2

Locus History Displayer

Publication Counts Displayer

0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

Sequence Feature Displayer

Gene Structure Displayer

J Browse Displayer

Overlapping Features Displayer

12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT2G16530 0.5kb upstream 0.5kb upstream 2980   true Chr2: 7162931-7165910
AT2G16530 0.5kb upstream 0.5kb upstream 500   false Chr2: 7165411-7165910
AT2G16530 0.5kb downstream 0.5kb downstream 2980   true Chr2: 7162431-7165410
AT2G16530 0.5kb downstream 0.5kb downstream 500   false Chr2: 7162431-7162930
AT2G16530 1.0kb upstream 1.0kb upstream 3480   true Chr2: 7162931-7166410
AT2G16530 1.0kb upstream 1.0kb upstream 1000   false Chr2: 7165411-7166410
AT2G16530 1.0kb downstream 1.0kb downstream 3480   true Chr2: 7161931-7165410
AT2G16530 1.0kb downstream 1.0kb downstream 1000   false Chr2: 7161931-7162930
AT2G16530 3.0kb upstream 3.0kb upstream 5480   true Chr2: 7162931-7168410
AT2G16530 3.0kb upstream 3.0kb upstream 3000   false Chr2: 7165411-7168410
AT2G16530 3.0kb downstream 3.0kb downstream 5480   true Chr2: 7159931-7165410
AT2G16530 3.0kb downstream 3.0kb downstream 3000   false Chr2: 7159931-7162930

Proteins

Protein Displayer


Function

Gene Ontology Displayer

0 Pathways

Data Source: KEGG

Gene --> Ontology term

Gene --> Pathways


Expression

Plant Ontology Displayer

Bar Efp Browser Displayer

Array Expression

RNA-seq Expression

Co-expression

Save / Export

 

 

 

 



Interactions

Cytoscape Network Displayer


Homology

Homologue Displayer

Phytomine Ortholog Displayer


Stocks

Alelle Table Displayer

Stock Gene Table Displayer


 

Other

9 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TIGR GO annotations assigned by TIGR Arabidopsis annotation effort 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139