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Gene : AT2G17030 A. thaliana

Gene ID  ? AT2G17030
Brief Description  F-box SKIP23-like protein (DUF295)  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: F-box family protein with a domain of unknown function (DUF295) (TAIR:AT2G17036.1).  Source: TAIR, Jun 30, 2015.

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT2G17030 0.5kb upstream 0.5kb upstream 2415   true Chr2: 7398556-7400970
AT2G17030 0.5kb upstream 0.5kb upstream 500   false Chr2: 7398556-7399055
AT2G17030 0.5kb downstream 0.5kb downstream 2415   true Chr2: 7399056-7401470
AT2G17030 0.5kb downstream 0.5kb downstream 500   false Chr2: 7400971-7401470
AT2G17030 1.0kb upstream 1.0kb upstream 2915   true Chr2: 7398056-7400970
AT2G17030 1.0kb upstream 1.0kb upstream 1000   false Chr2: 7398056-7399055
AT2G17030 1.0kb downstream 1.0kb downstream 2915   true Chr2: 7399056-7401970
AT2G17030 1.0kb downstream 1.0kb downstream 1000   false Chr2: 7400971-7401970
AT2G17030 3.0kb upstream 3.0kb upstream 4915   true Chr2: 7396056-7400970
AT2G17030 3.0kb upstream 3.0kb upstream 3000   false Chr2: 7396056-7399055
AT2G17030 3.0kb downstream 3.0kb downstream 4915   true Chr2: 7399056-7403970
AT2G17030 3.0kb downstream 3.0kb downstream 3000   false Chr2: 7400971-7403970

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0 Pathways

Data Source: KEGG

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9 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TIGR GO annotations assigned by TIGR Arabidopsis annotation effort 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139