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Gene : RECA2 A. thaliana

Gene ID  ? AT2G19490
Brief Description  recA DNA recombination family protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? recA DNA recombination family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: DNA repair, SOS response, DNA recombination, DNA metabolic process; CONTAINS InterPro DOMAIN/s: DNA recombination/repair protein RecA/RadB, ATP-binding domain (InterPro:IPR020588), ATPase, AAA type, core (InterPro:IPR003593), DNA recombination/repair protein RecA, conserved site (InterPro:IPR020584), DNA recombination and repair protein RecA (InterPro:IPR013765), DNA recombination/repair protein RecA, monomer-monomer interface (InterPro:IPR020587); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G32920.1).  Source: TAIR, Jun 30, 2015.
Name  ? A. thaliana recA homolog 2

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1 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
RECA2 and RECA3 have similar patterns of expression and functionally complement bacterial RecA. Loss of RECA2 results in seedling lethality. recA2 and recA3 mutants display rearranged mtDNA. 22415515

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT2G19490 0.5kb upstream 0.5kb upstream 3214   true Chr2: 8441020-8444233
AT2G19490 0.5kb upstream 0.5kb upstream 500   false Chr2: 8441020-8441519
AT2G19490 0.5kb downstream 0.5kb downstream 3214   true Chr2: 8441520-8444733
AT2G19490 0.5kb downstream 0.5kb downstream 500   false Chr2: 8444234-8444733
AT2G19490 1.0kb upstream 1.0kb upstream 3714   true Chr2: 8440520-8444233
AT2G19490 1.0kb upstream 1.0kb upstream 1000   false Chr2: 8440520-8441519
AT2G19490 1.0kb downstream 1.0kb downstream 3714   true Chr2: 8441520-8445233
AT2G19490 1.0kb downstream 1.0kb downstream 1000   false Chr2: 8444234-8445233
AT2G19490 3.0kb upstream 3.0kb upstream 5714   true Chr2: 8438520-8444233
AT2G19490 3.0kb upstream 3.0kb upstream 3000   false Chr2: 8438520-8441519
AT2G19490 3.0kb downstream 3.0kb downstream 5714   true Chr2: 8441520-8447233
AT2G19490 3.0kb downstream 3.0kb downstream 3000   false Chr2: 8444234-8447233

Proteins

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Function

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1 Pathways

Data Source: KEGG

Identifier Name
03440 Homologous recombination

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Expression

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Interactions

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Homology

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Stocks

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Other

11 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from GOC GO annotations assigned by the GO Consortium 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139