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Gene : AT2G20420 A. thaliana

Gene ID  ? AT2G20420
Brief Description  ATP citrate lyase (ACL) family protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? ATP citrate lyase (ACL) family protein; FUNCTIONS IN: succinate-CoA ligase (GDP-forming) activity, copper ion binding, ATP binding; INVOLVED IN: response to cadmium ion, metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Succinyl-CoA synthetase, beta subunit (InterPro:IPR005809), Succinyl-CoA synthetase, beta subunit, conserved site (InterPro:IPR017866), ATP-citrate lyase/succinyl-CoA ligase (InterPro:IPR005811), ATP-grasp fold (InterPro:IPR011761), ATP-grasp fold, subdomain 2 (InterPro:IPR013816), ATP-grasp fold, succinyl-CoA synthetase-type (InterPro:IPR013650), Succinyl-CoA synthetase-like (InterPro:IPR016102); BEST Arabidopsis thaliana protein match is: ATP-citrate lyase A-1 (TAIR:AT1G10670.4).  Source: TAIR, Jun 30, 2015.

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT2G20420 0.5kb upstream 0.5kb upstream 3330   true Chr2: 8804842-8808171
AT2G20420 0.5kb upstream 0.5kb upstream 500   false Chr2: 8804842-8805341
AT2G20420 0.5kb downstream 0.5kb downstream 3330   true Chr2: 8805342-8808671
AT2G20420 0.5kb downstream 0.5kb downstream 500   false Chr2: 8808172-8808671
AT2G20420 1.0kb upstream 1.0kb upstream 3830   true Chr2: 8804342-8808171
AT2G20420 1.0kb upstream 1.0kb upstream 1000   false Chr2: 8804342-8805341
AT2G20420 1.0kb downstream 1.0kb downstream 3830   true Chr2: 8805342-8809171
AT2G20420 1.0kb downstream 1.0kb downstream 1000   false Chr2: 8808172-8809171
AT2G20420 3.0kb upstream 3.0kb upstream 5830   true Chr2: 8802342-8808171
AT2G20420 3.0kb upstream 3.0kb upstream 3000   false Chr2: 8802342-8805341
AT2G20420 3.0kb downstream 3.0kb downstream 5830   true Chr2: 8805342-8811171
AT2G20420 3.0kb downstream 3.0kb downstream 3000   false Chr2: 8808172-8811171

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5 Pathways

Data Source: KEGG

Identifier Name
00020 Citrate cycle (TCA cycle)
01100 Metabolic pathways
01110 Biosynthesis of secondary metabolites
01200 Carbon metabolism
00640 Propanoate metabolism

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9 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0