help  | faq  | software  | ARAPORT

Gene : MEF21 A. thaliana

Gene ID  ? AT2G20540
Brief Description  mitochondrial editing factor 21  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? mitochondrial editing factor 21 (MEF21); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G56310.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Encodes a pentatricopeptide repeat protein (PPR) protein involved in mitochondrial mRNA editing.  Source: TAIR, Jun 30, 2015.
Name  ? mitochondrial editing factor 21

Locus History Displayer

Publication Counts Displayer

0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

Sequence Feature Displayer

Gene Structure Displayer

J Browse Displayer

Overlapping Features Displayer

12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT2G20540 0.5kb upstream 0.5kb upstream 2517   true Chr2: 8843579-8846095
AT2G20540 0.5kb upstream 0.5kb upstream 500   false Chr2: 8843579-8844078
AT2G20540 0.5kb downstream 0.5kb downstream 2517   true Chr2: 8844079-8846595
AT2G20540 0.5kb downstream 0.5kb downstream 500   false Chr2: 8846096-8846595
AT2G20540 1.0kb upstream 1.0kb upstream 3017   true Chr2: 8843079-8846095
AT2G20540 1.0kb upstream 1.0kb upstream 1000   false Chr2: 8843079-8844078
AT2G20540 1.0kb downstream 1.0kb downstream 3017   true Chr2: 8844079-8847095
AT2G20540 1.0kb downstream 1.0kb downstream 1000   false Chr2: 8846096-8847095
AT2G20540 3.0kb upstream 3.0kb upstream 5017   true Chr2: 8841079-8846095
AT2G20540 3.0kb upstream 3.0kb upstream 3000   false Chr2: 8841079-8844078
AT2G20540 3.0kb downstream 3.0kb downstream 5017   true Chr2: 8844079-8849095
AT2G20540 3.0kb downstream 3.0kb downstream 3000   false Chr2: 8846096-8849095

Proteins

Protein Displayer


Function

Gene Ontology Displayer

0 Pathways

Data Source: KEGG

Gene --> Ontology term

Gene --> Pathways


Expression

Plant Ontology Displayer

Bar Efp Browser Displayer

Array Expression

RNA-seq Expression

Co-expression

Save / Export

 

 

 

 



Interactions

Cytoscape Network Displayer


Homology

Homologue Displayer

Phytomine Ortholog Displayer


Stocks

Alelle Table Displayer

Stock Gene Table Displayer


 

Other

8 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TAIR GO annotations assigned by TAIR 8/01/2016
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139