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Gene : SRS3 A. thaliana

Gene ID  ? AT2G21400
Brief Description  SHI-related sequence3  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? SHI-related sequence3 (SRS3); CONTAINS InterPro DOMAIN/s: Lateral Root Primordium type 1, C-terminal (InterPro:IPR006511), Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510), Protein of unknown function DUF702 (InterPro:IPR007818); BEST Arabidopsis thaliana protein match is: Lateral root primordium (LRP) protein-related (TAIR:AT3G51060.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis.  Source: TAIR, Jun 30, 2015.
Name  ? SHI-related sequence3

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT2G21400 0.5kb upstream 0.5kb upstream 1923   true Chr2: 9157810-9159732
AT2G21400 0.5kb upstream 0.5kb upstream 500   false Chr2: 9157810-9158309
AT2G21400 0.5kb downstream 0.5kb downstream 1923   true Chr2: 9158310-9160232
AT2G21400 0.5kb downstream 0.5kb downstream 500   false Chr2: 9159733-9160232
AT2G21400 1.0kb upstream 1.0kb upstream 2423   true Chr2: 9157310-9159732
AT2G21400 1.0kb upstream 1.0kb upstream 1000   false Chr2: 9157310-9158309
AT2G21400 1.0kb downstream 1.0kb downstream 2423   true Chr2: 9158310-9160732
AT2G21400 1.0kb downstream 1.0kb downstream 1000   false Chr2: 9159733-9160732
AT2G21400 3.0kb upstream 3.0kb upstream 4423   true Chr2: 9155310-9159732
AT2G21400 3.0kb upstream 3.0kb upstream 3000   false Chr2: 9155310-9158309
AT2G21400 3.0kb downstream 3.0kb downstream 4423   true Chr2: 9158310-9162732
AT2G21400 3.0kb downstream 3.0kb downstream 3000   false Chr2: 9159733-9162732

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Data Source: KEGG

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7 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0