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Gene : PFK5 A. thaliana

Gene ID  ? AT2G22480
Brief Description  phosphofructokinase 5  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? phosphofructokinase 5 (PFK5); CONTAINS InterPro DOMAIN/s: Pyrophosphate-dependent phosphofructokinase TP0108 (InterPro:IPR012004), Phosphofructokinase (InterPro:IPR000023); BEST Arabidopsis thaliana protein match is: phosphofructokinase 4 (TAIR:AT5G61580.1).  Source: TAIR, Jun 30, 2015.
Name  ? phosphofructokinase 5

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT2G22480 0.5kb upstream 0.5kb upstream 3858   true Chr2: 9544783-9548640
AT2G22480 0.5kb upstream 0.5kb upstream 500   false Chr2: 9544783-9545282
AT2G22480 0.5kb downstream 0.5kb downstream 3858   true Chr2: 9545283-9549140
AT2G22480 0.5kb downstream 0.5kb downstream 500   false Chr2: 9548641-9549140
AT2G22480 1.0kb upstream 1.0kb upstream 4358   true Chr2: 9544283-9548640
AT2G22480 1.0kb upstream 1.0kb upstream 1000   false Chr2: 9544283-9545282
AT2G22480 1.0kb downstream 1.0kb downstream 4358   true Chr2: 9545283-9549640
AT2G22480 1.0kb downstream 1.0kb downstream 1000   false Chr2: 9548641-9549640
AT2G22480 3.0kb upstream 3.0kb upstream 6358   true Chr2: 9542283-9548640
AT2G22480 3.0kb upstream 3.0kb upstream 3000   false Chr2: 9542283-9545282
AT2G22480 3.0kb downstream 3.0kb downstream 6358   true Chr2: 9545283-9551640
AT2G22480 3.0kb downstream 3.0kb downstream 3000   false Chr2: 9548641-9551640

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9 Pathways

Data Source: KEGG

Identifier Name
00010 Glycolysis / Gluconeogenesis
01100 Metabolic pathways
01110 Biosynthesis of secondary metabolites
01200 Carbon metabolism
00051 Fructose and mannose metabolism
03018 RNA degradation
01230 Biosynthesis of amino acids
00052 Galactose metabolism
00030 Pentose phosphate pathway

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Expression

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Interactions

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10 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TIGR GO annotations assigned by TIGR Arabidopsis annotation effort 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139