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Gene : AT2G26030 A. thaliana

Gene ID  ? AT2G26030
Brief Description  F-box/RNI-like/FBD-like domains-containing protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? F-box/RNI-like/FBD-like domains-containing protein; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT5G44950.1).  Source: TAIR, Jun 30, 2015.

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT2G26030 0.5kb upstream 0.5kb upstream 2615   true Chr2: 11091330-11093944
AT2G26030 0.5kb upstream 0.5kb upstream 500   false Chr2: 11093445-11093944
AT2G26030 0.5kb downstream 0.5kb downstream 2615   true Chr2: 11090830-11093444
AT2G26030 0.5kb downstream 0.5kb downstream 500   false Chr2: 11090830-11091329
AT2G26030 1.0kb upstream 1.0kb upstream 3115   true Chr2: 11091330-11094444
AT2G26030 1.0kb upstream 1.0kb upstream 1000   false Chr2: 11093445-11094444
AT2G26030 1.0kb downstream 1.0kb downstream 3115   true Chr2: 11090330-11093444
AT2G26030 1.0kb downstream 1.0kb downstream 1000   false Chr2: 11090330-11091329
AT2G26030 3.0kb upstream 3.0kb upstream 5115   true Chr2: 11091330-11096444
AT2G26030 3.0kb upstream 3.0kb upstream 3000   false Chr2: 11093445-11096444
AT2G26030 3.0kb downstream 3.0kb downstream 5115   true Chr2: 11088330-11093444
AT2G26030 3.0kb downstream 3.0kb downstream 3000   false Chr2: 11088330-11091329

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0 Pathways

Data Source: KEGG

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9 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TIGR GO annotations assigned by TIGR Arabidopsis annotation effort 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139