Genomics
Sequence Feature Displayer
Gene Structure Displayer
J Browse Displayer
Overlapping Features Displayer
12 Flanking Regions
Flank size: from most upstream transcription start site, or most downstream transcription stop site
Region Name | Flank Size | Direction | Length | Gene Included? | Chromosome Location |
---|---|---|---|---|---|
AT2G26030 0.5kb upstream | 0.5kb | upstream |
2615
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true | Chr2: 11091330-11093944 |
AT2G26030 0.5kb upstream | 0.5kb | upstream |
500
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false | Chr2: 11093445-11093944 |
AT2G26030 0.5kb downstream | 0.5kb | downstream |
2615
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true | Chr2: 11090830-11093444 |
AT2G26030 0.5kb downstream | 0.5kb | downstream |
500
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false | Chr2: 11090830-11091329 |
AT2G26030 1.0kb upstream | 1.0kb | upstream |
3115
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true | Chr2: 11091330-11094444 |
AT2G26030 1.0kb upstream | 1.0kb | upstream |
1000
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false | Chr2: 11093445-11094444 |
AT2G26030 1.0kb downstream | 1.0kb | downstream |
3115
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true | Chr2: 11090330-11093444 |
AT2G26030 1.0kb downstream | 1.0kb | downstream |
1000
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false | Chr2: 11090330-11091329 |
AT2G26030 3.0kb upstream | 3.0kb | upstream |
5115
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true | Chr2: 11091330-11096444 |
AT2G26030 3.0kb upstream | 3.0kb | upstream |
3000
![]() |
false | Chr2: 11093445-11096444 |
AT2G26030 3.0kb downstream | 3.0kb | downstream |
5115
![]() |
true | Chr2: 11088330-11093444 |
AT2G26030 3.0kb downstream | 3.0kb | downstream |
3000
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false | Chr2: 11088330-11091329 |
Expression
Plant Ontology Displayer
Bar Efp Browser Displayer
Array Expression
RNA-seq Expression
Co-expression
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Other
9 Data Sets
Name | Description | Version |
---|---|---|
BAR Annotations Lookup | Mapping(s) between AGI locus and Affy Probeset identifier | 10/08/2013 |
Genome Annotation | Araport11 protein-coding, non-coding and transposable element genes | Araport11 (06/2016) |
RNA-seq expression | Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon | Araport11 (06/2016) |
PubMed to gene mapping | Curated associations between publications and NCBI Gene records | 8/12/2016 |
GO Annotation from TIGR | GO annotations assigned by TIGR Arabidopsis annotation effort | 8/01/2016 |
PO Annotation from TAIR | Literature-based annotations of genes to Plant Ontology (PO) terms | 06/30/2015 |
Swiss-Prot data set | High-quality, manually annotated, non-redundant protein sequence database | 2016_07 |
Panther data set | PANTHER paralogs from Arabidopsis | 11.0 |
BioGRID interaction data set | Curated set of genetic and physical interactions for Arabidopsis thaliana | 3.4.139 |