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Gene : emb1187 A. thaliana

Gene ID  ? AT2G26830
Brief Description  Protein kinase superfamily protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? embryo defective 1187 (emb1187); CONTAINS InterPro DOMAIN/s: Choline/ethanolamine kinase (InterPro:IPR002573), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT4G09760.1).  Source: TAIR, Jun 30, 2015.
Name  ? embryo defective 1187
  • synonyms:
  • CEK4,
  • choline/ethanolamine kinase 4

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1 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
CEK4 may be the plasma membrane-localized isoform of the CEK family involved in the rate-limiting step of PtdCho biosynthesis and appears to be required for embryo development in Arabidopsis. 25966764


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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT2G26830 0.5kb upstream 0.5kb upstream 4431   true Chr2: 11442741-11447171
AT2G26830 0.5kb upstream 0.5kb upstream 500   false Chr2: 11442741-11443240
AT2G26830 0.5kb downstream 0.5kb downstream 4431   true Chr2: 11443241-11447671
AT2G26830 0.5kb downstream 0.5kb downstream 500   false Chr2: 11447172-11447671
AT2G26830 1.0kb upstream 1.0kb upstream 4931   true Chr2: 11442241-11447171
AT2G26830 1.0kb upstream 1.0kb upstream 1000   false Chr2: 11442241-11443240
AT2G26830 1.0kb downstream 1.0kb downstream 4931   true Chr2: 11443241-11448171
AT2G26830 1.0kb downstream 1.0kb downstream 1000   false Chr2: 11447172-11448171
AT2G26830 3.0kb upstream 3.0kb upstream 6931   true Chr2: 11440241-11447171
AT2G26830 3.0kb upstream 3.0kb upstream 3000   false Chr2: 11440241-11443240
AT2G26830 3.0kb downstream 3.0kb downstream 6931   true Chr2: 11443241-11450171
AT2G26830 3.0kb downstream 3.0kb downstream 3000   false Chr2: 11447172-11450171


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2 Pathways

Data Source: KEGG

Identifier Name
01100 Metabolic pathways
00564 Glycerophospholipid metabolism

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10 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016