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Gene : AT2G28990 A. thaliana

Gene ID  ? AT2G28990
Brief Description  Leucine-rich repeat protein kinase family protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT2G28970.1).  Source: TAIR, Jun 30, 2015.

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT2G28990 0.5kb upstream 0.5kb upstream 5590   true Chr2: 12454137-12459726
AT2G28990 0.5kb upstream 0.5kb upstream 500   false Chr2: 12454137-12454636
AT2G28990 0.5kb downstream 0.5kb downstream 5590   true Chr2: 12454637-12460226
AT2G28990 0.5kb downstream 0.5kb downstream 500   false Chr2: 12459727-12460226
AT2G28990 1.0kb upstream 1.0kb upstream 6090   true Chr2: 12453637-12459726
AT2G28990 1.0kb upstream 1.0kb upstream 1000   false Chr2: 12453637-12454636
AT2G28990 1.0kb downstream 1.0kb downstream 6090   true Chr2: 12454637-12460726
AT2G28990 1.0kb downstream 1.0kb downstream 1000   false Chr2: 12459727-12460726
AT2G28990 3.0kb upstream 3.0kb upstream 8090   true Chr2: 12451637-12459726
AT2G28990 3.0kb upstream 3.0kb upstream 3000   false Chr2: 12451637-12454636
AT2G28990 3.0kb downstream 3.0kb downstream 8090   true Chr2: 12454637-12462726
AT2G28990 3.0kb downstream 3.0kb downstream 3000   false Chr2: 12459727-12462726

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0 Pathways

Data Source: KEGG

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9 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139