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Gene : AT2G29810 A. thaliana

Gene ID  ? AT2G29810
Brief Description  Galactose oxidase/kelch repeat superfamily protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT2G29800.1).  Source: TAIR, Jun 30, 2015.

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT2G29810 0.5kb upstream 0.5kb upstream 1652   true Chr2: 12726102-12727753
AT2G29810 0.5kb upstream 0.5kb upstream 500   false Chr2: 12727254-12727753
AT2G29810 0.5kb downstream 0.5kb downstream 1652   true Chr2: 12725602-12727253
AT2G29810 0.5kb downstream 0.5kb downstream 500   false Chr2: 12725602-12726101
AT2G29810 1.0kb upstream 1.0kb upstream 2152   true Chr2: 12726102-12728253
AT2G29810 1.0kb upstream 1.0kb upstream 1000   false Chr2: 12727254-12728253
AT2G29810 1.0kb downstream 1.0kb downstream 2152   true Chr2: 12725102-12727253
AT2G29810 1.0kb downstream 1.0kb downstream 1000   false Chr2: 12725102-12726101
AT2G29810 3.0kb upstream 3.0kb upstream 4152   true Chr2: 12726102-12730253
AT2G29810 3.0kb upstream 3.0kb upstream 3000   false Chr2: 12727254-12730253
AT2G29810 3.0kb downstream 3.0kb downstream 4152   true Chr2: 12723102-12727253
AT2G29810 3.0kb downstream 3.0kb downstream 3000   false Chr2: 12723102-12726101

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0 Pathways

Data Source: KEGG

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7 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TIGR GO annotations assigned by TIGR Arabidopsis annotation effort 8/01/2016
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0