help  | faq  | software  | ARAPORT

Gene : AT2G31810 A. thaliana

Gene ID  ? AT2G31810
Brief Description  ACT domain-containing small subunit of acetolactate synthase protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? ACT domain-containing small subunit of acetolactate synthase protein; FUNCTIONS IN: acetolactate synthase activity, amino acid binding; INVOLVED IN: branched chain family amino acid biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Acetolactate synthase, small subunit (InterPro:IPR004789), Amino acid-binding ACT (InterPro:IPR002912), Acetolactate synthase, small subunit, C-terminal (InterPro:IPR019455); BEST Arabidopsis thaliana protein match is: VALINE-TOLERANT 1 (TAIR:AT5G16290.2).  Source: TAIR, Jun 30, 2015.

Locus History Displayer

Publication Counts Displayer

0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

Sequence Feature Displayer

Gene Structure Displayer

J Browse Displayer

Overlapping Features Displayer

12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT2G31810 0.5kb upstream 0.5kb upstream 5165   true Chr2: 13523548-13528712
AT2G31810 0.5kb upstream 0.5kb upstream 500   false Chr2: 13523548-13524047
AT2G31810 0.5kb downstream 0.5kb downstream 5165   true Chr2: 13524048-13529212
AT2G31810 0.5kb downstream 0.5kb downstream 500   false Chr2: 13528713-13529212
AT2G31810 1.0kb upstream 1.0kb upstream 5665   true Chr2: 13523048-13528712
AT2G31810 1.0kb upstream 1.0kb upstream 1000   false Chr2: 13523048-13524047
AT2G31810 1.0kb downstream 1.0kb downstream 5665   true Chr2: 13524048-13529712
AT2G31810 1.0kb downstream 1.0kb downstream 1000   false Chr2: 13528713-13529712
AT2G31810 3.0kb upstream 3.0kb upstream 7665   true Chr2: 13521048-13528712
AT2G31810 3.0kb upstream 3.0kb upstream 3000   false Chr2: 13521048-13524047
AT2G31810 3.0kb downstream 3.0kb downstream 7665   true Chr2: 13524048-13531712
AT2G31810 3.0kb downstream 3.0kb downstream 3000   false Chr2: 13528713-13531712

Proteins

Protein Displayer


Function

Gene Ontology Displayer

8 Pathways

Data Source: KEGG

Identifier Name
01100 Metabolic pathways
01110 Biosynthesis of secondary metabolites
01230 Biosynthesis of amino acids
01210 2-Oxocarboxylic acid metabolism
00770 Pantothenate and CoA biosynthesis
00290 Valine, leucine and isoleucine biosynthesis
00650 Butanoate metabolism
00660 C5-Branched dibasic acid metabolism

Gene --> Ontology term

Gene --> Pathways


Expression

Plant Ontology Displayer

Bar Efp Browser Displayer

Array Expression

RNA-seq Expression

Co-expression

Save / Export

 

 

 

 



Interactions

Cytoscape Network Displayer


Homology

Homologue Displayer

Phytomine Ortholog Displayer


Stocks

Alelle Table Displayer

Stock Gene Table Displayer


 

Other

10 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139