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Gene : AT2G32070 A. thaliana

Gene ID  ? AT2G32070
Brief Description  Polynucleotidyl transferase, ribonuclease H-like superfamily protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: ribonuclease activity, nucleic acid binding; INVOLVED IN: RNA modification; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease CAF1 (InterPro:IPR006941), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein (TAIR:AT1G80780.2).  Source: TAIR, Jun 30, 2015.

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT2G32070 0.5kb upstream 0.5kb upstream 1967   true Chr2: 13640594-13642560
AT2G32070 0.5kb upstream 0.5kb upstream 500   false Chr2: 13642061-13642560
AT2G32070 0.5kb downstream 0.5kb downstream 1967   true Chr2: 13640094-13642060
AT2G32070 0.5kb downstream 0.5kb downstream 500   false Chr2: 13640094-13640593
AT2G32070 1.0kb upstream 1.0kb upstream 2467   true Chr2: 13640594-13643060
AT2G32070 1.0kb upstream 1.0kb upstream 1000   false Chr2: 13642061-13643060
AT2G32070 1.0kb downstream 1.0kb downstream 2467   true Chr2: 13639594-13642060
AT2G32070 1.0kb downstream 1.0kb downstream 1000   false Chr2: 13639594-13640593
AT2G32070 3.0kb upstream 3.0kb upstream 4467   true Chr2: 13640594-13645060
AT2G32070 3.0kb upstream 3.0kb upstream 3000   false Chr2: 13642061-13645060
AT2G32070 3.0kb downstream 3.0kb downstream 4467   true Chr2: 13637594-13642060
AT2G32070 3.0kb downstream 3.0kb downstream 3000   false Chr2: 13637594-13640593

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1 Pathways

Data Source: KEGG

Identifier Name
03018 RNA degradation

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Expression

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9 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0