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Gene : AT2G34060 A. thaliana

Gene ID  ? AT2G34060
Brief Description  Peroxidase superfamily protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? Peroxidase superfamily protein; FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress, oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016), Peroxidase, active site (InterPro:IPR019794); BEST Arabidopsis thaliana protein match is: root hair specific 19 (TAIR:AT5G67400.1).  Source: TAIR, Jun 30, 2015.

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT2G34060 0.5kb upstream 0.5kb upstream 2429   true Chr2: 14384297-14386725
AT2G34060 0.5kb upstream 0.5kb upstream 500   false Chr2: 14384297-14384796
AT2G34060 0.5kb downstream 0.5kb downstream 2429   true Chr2: 14384797-14387225
AT2G34060 0.5kb downstream 0.5kb downstream 500   false Chr2: 14386726-14387225
AT2G34060 1.0kb upstream 1.0kb upstream 2929   true Chr2: 14383797-14386725
AT2G34060 1.0kb upstream 1.0kb upstream 1000   false Chr2: 14383797-14384796
AT2G34060 1.0kb downstream 1.0kb downstream 2929   true Chr2: 14384797-14387725
AT2G34060 1.0kb downstream 1.0kb downstream 1000   false Chr2: 14386726-14387725
AT2G34060 3.0kb upstream 3.0kb upstream 4929   true Chr2: 14381797-14386725
AT2G34060 3.0kb upstream 3.0kb upstream 3000   false Chr2: 14381797-14384796
AT2G34060 3.0kb downstream 3.0kb downstream 4929   true Chr2: 14384797-14389725
AT2G34060 3.0kb downstream 3.0kb downstream 3000   false Chr2: 14386726-14389725

Proteins

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Function

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3 Pathways

Data Source: KEGG

Identifier Name
01100 Metabolic pathways
01110 Biosynthesis of secondary metabolites
00940 Phenylpropanoid biosynthesis

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Expression

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9 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TIGR GO annotations assigned by TIGR Arabidopsis annotation effort 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0