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Gene : IKU1 A. thaliana

Gene ID  ? AT2G35230
Brief Description  VQ motif-containing protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? IKU1; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of seed growth, endosperm development; LOCATED IN: polar nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: VQ (InterPro:IPR008889); BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT1G32610.2).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Contains a plant-specific VQ motif. Involved in endosperm growth and seed size determination. IKU1 is expressed in the early endosperm and its progenitor, the central cell.IKU1 interacts with MINI3 in the yeast two-hybrid system.  Source: TAIR, Jun 30, 2015.
Name  ? HAIKU1

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1 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
Data show that IKU1 (At2g35230) gene mutants cause reduced endosperm growth and the production of small seeds. 20545893

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT2G35230 0.5kb upstream 0.5kb upstream 2675   true Chr2: 14841791-14844465
AT2G35230 0.5kb upstream 0.5kb upstream 500   false Chr2: 14841791-14842290
AT2G35230 0.5kb downstream 0.5kb downstream 2675   true Chr2: 14842291-14844965
AT2G35230 0.5kb downstream 0.5kb downstream 500   false Chr2: 14844466-14844965
AT2G35230 1.0kb upstream 1.0kb upstream 3175   true Chr2: 14841291-14844465
AT2G35230 1.0kb upstream 1.0kb upstream 1000   false Chr2: 14841291-14842290
AT2G35230 1.0kb downstream 1.0kb downstream 3175   true Chr2: 14842291-14845465
AT2G35230 1.0kb downstream 1.0kb downstream 1000   false Chr2: 14844466-14845465
AT2G35230 3.0kb upstream 3.0kb upstream 5175   true Chr2: 14839291-14844465
AT2G35230 3.0kb upstream 3.0kb upstream 3000   false Chr2: 14839291-14842290
AT2G35230 3.0kb downstream 3.0kb downstream 5175   true Chr2: 14842291-14847465
AT2G35230 3.0kb downstream 3.0kb downstream 3000   false Chr2: 14844466-14847465

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0 Pathways

Data Source: KEGG

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Expression

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Interactions

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9 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TAIR GO annotations assigned by TAIR 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016