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Gene : DREB19 A. thaliana

Gene ID  ? AT2G38340
Brief Description  Integrase-type DNA-binding superfamily protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? Integrase-type DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT2G40340.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? encodes a member of the DREB subfamily A-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are eight members in this subfamily including DREB2A AND DREB2B that are involved in response to drought.  Source: TAIR, Jun 30, 2015.
Name  ? dehydration response element-binding protein 19

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1 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
Data demonstrate that RAP2.6 (At1g43160), RAP2.6L (At5g13330), DREB 26 (At1g21910) and DREB19 (At2g38340) are transactivators, they exhibit tissue specific expression, and participate in developmental processes as well as biotic/abiotic stress signaling. 21069430

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT2G38340 0.5kb upstream 0.5kb upstream 1720   true Chr2: 16067396-16069115
AT2G38340 0.5kb upstream 0.5kb upstream 500   false Chr2: 16068616-16069115
AT2G38340 0.5kb downstream 0.5kb downstream 1720   true Chr2: 16066896-16068615
AT2G38340 0.5kb downstream 0.5kb downstream 500   false Chr2: 16066896-16067395
AT2G38340 1.0kb upstream 1.0kb upstream 2220   true Chr2: 16067396-16069615
AT2G38340 1.0kb upstream 1.0kb upstream 1000   false Chr2: 16068616-16069615
AT2G38340 1.0kb downstream 1.0kb downstream 2220   true Chr2: 16066396-16068615
AT2G38340 1.0kb downstream 1.0kb downstream 1000   false Chr2: 16066396-16067395
AT2G38340 3.0kb upstream 3.0kb upstream 4220   true Chr2: 16067396-16071615
AT2G38340 3.0kb upstream 3.0kb upstream 3000   false Chr2: 16068616-16071615
AT2G38340 3.0kb downstream 3.0kb downstream 4220   true Chr2: 16064396-16068615
AT2G38340 3.0kb downstream 3.0kb downstream 3000   false Chr2: 16064396-16067395

Proteins

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0 Pathways

Data Source: KEGG

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Expression

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Array Expression

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Interactions

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Homology

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9 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TIGR GO annotations assigned by TIGR Arabidopsis annotation effort 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016