help  | faq  | software  | ARAPORT

Gene : CDKB1;2 A. thaliana

Gene ID  ? AT2G38620
Brief Description  cyclin-dependent kinase B1;2  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? cyclin-dependent kinase B1;2 (CDKB1;2); CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: cyclin-dependent kinase B1;1 (TAIR:AT3G54180.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Encodes a member of a plant specific family of cyclin dependent kinases.  Source: TAIR, Jun 30, 2015.
Name  ? cyclin-dependent kinase B1;2

Locus History Displayer

Publication Counts Displayer

0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

Sequence Feature Displayer

Gene Structure Displayer

J Browse Displayer

Overlapping Features Displayer

12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT2G38620 0.5kb upstream 0.5kb upstream 2114   true Chr2: 16151973-16154086
AT2G38620 0.5kb upstream 0.5kb upstream 500   false Chr2: 16151973-16152472
AT2G38620 0.5kb downstream 0.5kb downstream 2114   true Chr2: 16152473-16154586
AT2G38620 0.5kb downstream 0.5kb downstream 500   false Chr2: 16154087-16154586
AT2G38620 1.0kb upstream 1.0kb upstream 2614   true Chr2: 16151473-16154086
AT2G38620 1.0kb upstream 1.0kb upstream 1000   false Chr2: 16151473-16152472
AT2G38620 1.0kb downstream 1.0kb downstream 2614   true Chr2: 16152473-16155086
AT2G38620 1.0kb downstream 1.0kb downstream 1000   false Chr2: 16154087-16155086
AT2G38620 3.0kb upstream 3.0kb upstream 4614   true Chr2: 16149473-16154086
AT2G38620 3.0kb upstream 3.0kb upstream 3000   false Chr2: 16149473-16152472
AT2G38620 3.0kb downstream 3.0kb downstream 4614   true Chr2: 16152473-16157086
AT2G38620 3.0kb downstream 3.0kb downstream 3000   false Chr2: 16154087-16157086

Proteins

Protein Displayer


Function

Gene Ontology Displayer

0 Pathways

Data Source: KEGG

Gene --> Ontology term

Gene --> Pathways


Expression

Plant Ontology Displayer

Bar Efp Browser Displayer

Array Expression

RNA-seq Expression

Co-expression

Save / Export

 

 

 

 



Interactions

Cytoscape Network Displayer


Homology

Homologue Displayer

Phytomine Ortholog Displayer


Stocks

Alelle Table Displayer

Stock Gene Table Displayer


 

Other

10 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139