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Gene : PECT1 A. thaliana

Gene ID  ? AT2G38670
Brief Description  phosphorylethanolamine cytidylyltransferase 1  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? phosphorylethanolamine cytidylyltransferase 1 (PECT1); CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Cytidyltransferase-related (InterPro:IPR004821), Cytidylyltransferase (InterPro:IPR004820); BEST Arabidopsis thaliana protein match is: phosphorylcholine cytidylyltransferase (TAIR:AT2G32260.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Encodes a mitochondrial ethanolamine-phosphate cytidylyltransferase, involved in phosphatidylethanolamine (PE) biosynthesis.  Source: TAIR, Jun 30, 2015.
Name  ? phosphorylethanolamine cytidylyltransferase 1

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2 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
CTP:PHOSPHORYLETHANOLAMINE CYTIDYLYLTRANSFERASE is a rate limiting enzyme in phosphatidylethanolamine biosynthesis and pect1 mutants exhibit embryonic and postembryonic defects. [PECT] 17189343
Data indicate that phosphorylethanolamine cytidylyltransferase 1 (PECT1) regulates mitochondrial phosphatidylethanolamine levels, which are important for maintaining respiration capacity in leaves during prolonged growth under short-day conditions. 23872271

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT2G38670 0.5kb upstream 0.5kb upstream 3707   true Chr2: 16168212-16171918
AT2G38670 0.5kb upstream 0.5kb upstream 500   false Chr2: 16168212-16168711
AT2G38670 0.5kb downstream 0.5kb downstream 3707   true Chr2: 16168712-16172418
AT2G38670 0.5kb downstream 0.5kb downstream 500   false Chr2: 16171919-16172418
AT2G38670 1.0kb upstream 1.0kb upstream 4207   true Chr2: 16167712-16171918
AT2G38670 1.0kb upstream 1.0kb upstream 1000   false Chr2: 16167712-16168711
AT2G38670 1.0kb downstream 1.0kb downstream 4207   true Chr2: 16168712-16172918
AT2G38670 1.0kb downstream 1.0kb downstream 1000   false Chr2: 16171919-16172918
AT2G38670 3.0kb upstream 3.0kb upstream 6207   true Chr2: 16165712-16171918
AT2G38670 3.0kb upstream 3.0kb upstream 3000   false Chr2: 16165712-16168711
AT2G38670 3.0kb downstream 3.0kb downstream 6207   true Chr2: 16168712-16174918
AT2G38670 3.0kb downstream 3.0kb downstream 3000   false Chr2: 16171919-16174918

Proteins

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Function

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2 Pathways

Data Source: KEGG

Identifier Name
01100 Metabolic pathways
00564 Glycerophospholipid metabolism

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Expression

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11 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TIGR GO annotations assigned by TIGR Arabidopsis annotation effort 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139