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Gene : AT2G39530 A. thaliana

Gene ID  ? AT2G39530
Brief Description  Uncharacterized protein family (UPF0497)  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? Uncharacterised protein family (UPF0497); CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702), Uncharacterised protein family UPF0497, trans-membrane plant subgroup (InterPro:IPR006459); BEST Arabidopsis thaliana protein match is: Uncharacterised protein family (UPF0497) (TAIR:AT2G39518.1).  Source: TAIR, Jun 30, 2015.
  • synonyms:
  • CASPL4D1,
  • CASP-like protein 4D1

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT2G39530 0.5kb upstream 0.5kb upstream 1661   true Chr2: 16498364-16500024
AT2G39530 0.5kb upstream 0.5kb upstream 500   false Chr2: 16499525-16500024
AT2G39530 0.5kb downstream 0.5kb downstream 1661   true Chr2: 16497864-16499524
AT2G39530 0.5kb downstream 0.5kb downstream 500   false Chr2: 16497864-16498363
AT2G39530 1.0kb upstream 1.0kb upstream 2161   true Chr2: 16498364-16500524
AT2G39530 1.0kb upstream 1.0kb upstream 1000   false Chr2: 16499525-16500524
AT2G39530 1.0kb downstream 1.0kb downstream 2161   true Chr2: 16497364-16499524
AT2G39530 1.0kb downstream 1.0kb downstream 1000   false Chr2: 16497364-16498363
AT2G39530 3.0kb upstream 3.0kb upstream 4161   true Chr2: 16498364-16502524
AT2G39530 3.0kb upstream 3.0kb upstream 3000   false Chr2: 16499525-16502524
AT2G39530 3.0kb downstream 3.0kb downstream 4161   true Chr2: 16495364-16499524
AT2G39530 3.0kb downstream 3.0kb downstream 3000   false Chr2: 16495364-16498363

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0 Pathways

Data Source: KEGG

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9 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TAIR GO annotations assigned by TAIR 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139