help  | faq  | software  | ARAPORT

Gene : CPK14 A. thaliana

Gene ID  ? AT2G41860
Brief Description  calcium-dependent protein kinase 14  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? calcium-dependent protein kinase 14 (CPK14); FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: cytoplasm; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), EF-Hand 1, calcium-binding site (InterPro:IPR018247), Serine/threonine-protein kinase domain (InterPro:IPR002290), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249), Calcium-dependent protein kinase (InterPro:IPR020642), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: calcium-dependent protein kinase 32 (TAIR:AT3G57530.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? member of Calcium Dependent Protein Kinase  Source: TAIR, Jun 30, 2015.
Name  ? calcium-dependent protein kinase 14

Locus History Displayer

Publication Counts Displayer

0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

Sequence Feature Displayer

Gene Structure Displayer

J Browse Displayer

Overlapping Features Displayer

12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT2G41860 0.5kb upstream 0.5kb upstream 3376   true Chr2: 17467282-17470657
AT2G41860 0.5kb upstream 0.5kb upstream 500   false Chr2: 17470158-17470657
AT2G41860 0.5kb downstream 0.5kb downstream 3376   true Chr2: 17466782-17470157
AT2G41860 0.5kb downstream 0.5kb downstream 500   false Chr2: 17466782-17467281
AT2G41860 1.0kb upstream 1.0kb upstream 3876   true Chr2: 17467282-17471157
AT2G41860 1.0kb upstream 1.0kb upstream 1000   false Chr2: 17470158-17471157
AT2G41860 1.0kb downstream 1.0kb downstream 3876   true Chr2: 17466282-17470157
AT2G41860 1.0kb downstream 1.0kb downstream 1000   false Chr2: 17466282-17467281
AT2G41860 3.0kb upstream 3.0kb upstream 5876   true Chr2: 17467282-17473157
AT2G41860 3.0kb upstream 3.0kb upstream 3000   false Chr2: 17470158-17473157
AT2G41860 3.0kb downstream 3.0kb downstream 5876   true Chr2: 17464282-17470157
AT2G41860 3.0kb downstream 3.0kb downstream 3000   false Chr2: 17464282-17467281

Proteins

Protein Displayer


Function

Gene Ontology Displayer

1 Pathways

Data Source: KEGG

Identifier Name
04626 Plant-pathogen interaction

Gene --> Ontology term

Gene --> Pathways


Expression

Plant Ontology Displayer

Bar Efp Browser Displayer

Array Expression

RNA-seq Expression

Co-expression

Save / Export

 

 

 

 



Interactions

Cytoscape Network Displayer


Homology

Homologue Displayer

Phytomine Ortholog Displayer


Stocks

Alelle Table Displayer

Stock Gene Table Displayer


 

Other

9 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0