help  | faq  | software  | ARAPORT

Gene : LBD16 A. thaliana

Gene ID  ? AT2G42430
Brief Description  lateral organ boundaries-domain 16  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? lateral organ boundaries-domain 16 (LBD16); CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: lateral organ boundaries-domain 29 (TAIR:AT3G58190.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? LOB-domain protein gene LBD16. This gene contains one auxin-responsive element (AuxRE).  Source: TAIR, Jun 30, 2015.
Name  ? lateral organ boundaries-domain 16
  • synonyms:
  • ASL18,
  • ASYMMETRIC LEAVES2-LIKE 18

Locus History Displayer

Publication Counts Displayer

7 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
LBD16 and LBD18 might function in a combinatorial manner in lateral root formation. 19717544
Results indicate that the localized activity of LBD16/ASL18 and its related LBD/ASLs is involved in the symmetry breaking of lateral root (LR) founder cells for LR initiation, a key step for constructing the plant root system. 22278921
Data show that overexpression of each of the LBD genes promotes callus formation in the absence of exogenous phytohormones, while suppression of LBD function inhibits the callus induction process. 22508267
LBD16, LBD29, and LBD18 are involved in cell cycle progression of the pericycle in response to auxin. 22699776
PUCHI co-acts with LBD16 and LBD18 to control lateral root primordium development and lateral root emergence. 23749813
LBD16 is a key molecular player in the xylem pole pericycle cells during giant cells and gall development. 24803293
Results suggest that Lateral Organ Boundaries Domain16 and 18 (LBD16 and LBD18) are important regulators of lateral root (LR) initiation and development downstream of AUXIN1 (AUX1) and LIKE-AUXIN3 (LAX3) auxin influx carriers. 26059335

Genomics

Sequence Feature Displayer

Gene Structure Displayer

J Browse Displayer

Overlapping Features Displayer

12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT2G42430 0.5kb upstream 0.5kb upstream 2485   true Chr2: 17662853-17665337
AT2G42430 0.5kb upstream 0.5kb upstream 500   false Chr2: 17662853-17663352
AT2G42430 0.5kb downstream 0.5kb downstream 2485   true Chr2: 17663353-17665837
AT2G42430 0.5kb downstream 0.5kb downstream 500   false Chr2: 17665338-17665837
AT2G42430 1.0kb upstream 1.0kb upstream 2985   true Chr2: 17662353-17665337
AT2G42430 1.0kb upstream 1.0kb upstream 1000   false Chr2: 17662353-17663352
AT2G42430 1.0kb downstream 1.0kb downstream 2985   true Chr2: 17663353-17666337
AT2G42430 1.0kb downstream 1.0kb downstream 1000   false Chr2: 17665338-17666337
AT2G42430 3.0kb upstream 3.0kb upstream 4985   true Chr2: 17660353-17665337
AT2G42430 3.0kb upstream 3.0kb upstream 3000   false Chr2: 17660353-17663352
AT2G42430 3.0kb downstream 3.0kb downstream 4985   true Chr2: 17663353-17668337
AT2G42430 3.0kb downstream 3.0kb downstream 3000   false Chr2: 17665338-17668337

Proteins

Protein Displayer


Function

Gene Ontology Displayer

0 Pathways

Data Source: KEGG

Gene --> Ontology term

Gene --> Pathways


Expression

Plant Ontology Displayer

Bar Efp Browser Displayer

Array Expression

RNA-seq Expression

Co-expression

Save / Export

 

 

 

 



Interactions

Cytoscape Network Displayer


Homology

Homologue Displayer

Phytomine Ortholog Displayer


Stocks

Alelle Table Displayer

Stock Gene Table Displayer


 

Other

10 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TAIR GO annotations assigned by TAIR 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139