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Gene : GRF9 A. thaliana

Gene ID  ? AT2G42590
Brief Description  general regulatory factor 9  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? general regulatory factor 9 (GRF9); FUNCTIONS IN: protein phosphorylated amino acid binding, calcium ion binding; LOCATED IN: chloroplast stroma, nucleus, plasma membrane, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: 14-3-3 protein (InterPro:IPR000308); BEST Arabidopsis thaliana protein match is: general regulatory factor 12 (TAIR:AT1G26480.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? 14-3-3 gene. Binds calcium and displays induced structural changes.  Source: TAIR, Jun 30, 2015.
Name  ? general regulatory factor 9
  • synonyms:
  • GRF14,
  • GF14 MU

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1 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
GRF9 is involved in allocating more carbon from the shoot to the root and enhancing proton secretion in the root growing zone, and this process is important for root response to mild water stress. 25873671

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT2G42590 0.5kb upstream 0.5kb upstream 2653   true Chr2: 17731830-17734482
AT2G42590 0.5kb upstream 0.5kb upstream 500   false Chr2: 17733983-17734482
AT2G42590 0.5kb downstream 0.5kb downstream 2653   true Chr2: 17731330-17733982
AT2G42590 0.5kb downstream 0.5kb downstream 500   false Chr2: 17731330-17731829
AT2G42590 1.0kb upstream 1.0kb upstream 3153   true Chr2: 17731830-17734982
AT2G42590 1.0kb upstream 1.0kb upstream 1000   false Chr2: 17733983-17734982
AT2G42590 1.0kb downstream 1.0kb downstream 3153   true Chr2: 17730830-17733982
AT2G42590 1.0kb downstream 1.0kb downstream 1000   false Chr2: 17730830-17731829
AT2G42590 3.0kb upstream 3.0kb upstream 5153   true Chr2: 17731830-17736982
AT2G42590 3.0kb upstream 3.0kb upstream 3000   false Chr2: 17733983-17736982
AT2G42590 3.0kb downstream 3.0kb downstream 5153   true Chr2: 17728830-17733982
AT2G42590 3.0kb downstream 3.0kb downstream 3000   false Chr2: 17728830-17731829

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0 Pathways

Data Source: KEGG

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Expression

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11 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TAIR GO annotations assigned by TAIR 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139