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Gene : ATPMEPCRD A. thaliana

Gene ID  ? AT2G43050
Brief Description  Plant invertase/pectin methylesterase inhibitor superfamily  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? ATPMEPCRD; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: pectin methylesterase 61 (TAIR:AT3G59010.1).  Source: TAIR, Jun 30, 2015.

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT2G43050 0.5kb upstream 0.5kb upstream 2574   true Chr2: 17901870-17904443
AT2G43050 0.5kb upstream 0.5kb upstream 500   false Chr2: 17901870-17902369
AT2G43050 0.5kb downstream 0.5kb downstream 2574   true Chr2: 17902370-17904943
AT2G43050 0.5kb downstream 0.5kb downstream 500   false Chr2: 17904444-17904943
AT2G43050 1.0kb upstream 1.0kb upstream 3074   true Chr2: 17901370-17904443
AT2G43050 1.0kb upstream 1.0kb upstream 1000   false Chr2: 17901370-17902369
AT2G43050 1.0kb downstream 1.0kb downstream 3074   true Chr2: 17902370-17905443
AT2G43050 1.0kb downstream 1.0kb downstream 1000   false Chr2: 17904444-17905443
AT2G43050 3.0kb upstream 3.0kb upstream 5074   true Chr2: 17899370-17904443
AT2G43050 3.0kb upstream 3.0kb upstream 3000   false Chr2: 17899370-17902369
AT2G43050 3.0kb downstream 3.0kb downstream 5074   true Chr2: 17902370-17907443
AT2G43050 3.0kb downstream 3.0kb downstream 3000   false Chr2: 17904444-17907443

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0 Pathways

Data Source: KEGG

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8 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0