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Gene : AT2G43770 A. thaliana

Gene ID  ? AT2G43770
Brief Description  Transducin/WD40 repeat-like superfamily protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT3G49660.1).  Source: TAIR, Jun 30, 2015.

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT2G43770 0.5kb upstream 0.5kb upstream 2476   true Chr2: 18134061-18136536
AT2G43770 0.5kb upstream 0.5kb upstream 500   false Chr2: 18136037-18136536
AT2G43770 0.5kb downstream 0.5kb downstream 2476   true Chr2: 18133561-18136036
AT2G43770 0.5kb downstream 0.5kb downstream 500   false Chr2: 18133561-18134060
AT2G43770 1.0kb upstream 1.0kb upstream 2976   true Chr2: 18134061-18137036
AT2G43770 1.0kb upstream 1.0kb upstream 1000   false Chr2: 18136037-18137036
AT2G43770 1.0kb downstream 1.0kb downstream 2976   true Chr2: 18133061-18136036
AT2G43770 1.0kb downstream 1.0kb downstream 1000   false Chr2: 18133061-18134060
AT2G43770 3.0kb upstream 3.0kb upstream 4976   true Chr2: 18134061-18139036
AT2G43770 3.0kb upstream 3.0kb upstream 3000   false Chr2: 18136037-18139036
AT2G43770 3.0kb downstream 3.0kb downstream 4976   true Chr2: 18131061-18136036
AT2G43770 3.0kb downstream 3.0kb downstream 3000   false Chr2: 18131061-18134060

Proteins

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Function

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1 Pathways

Data Source: KEGG

Identifier Name
03040 Spliceosome

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Expression

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10 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TIGR GO annotations assigned by TIGR Arabidopsis annotation effort 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
TrEMBL data set Computationally analysed records, enriched with automatic annotation 2016_07
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139