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Gene : COS1 A. thaliana

Gene ID  ? AT2G44050
Brief Description  6,7-dimethyl-8-ribityllumazine synthase / DMRL synthase / lumazine synthase / riboflavin synthase  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? COI1 SUPPRESSOR1 (COS1); FUNCTIONS IN: 6,7-dimethyl-8-ribityllumazine synthase activity; INVOLVED IN: riboflavin biosynthetic process, jasmonic acid mediated signaling pathway; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 6,7-dimethyl-8-ribityllumazine synthase (InterPro:IPR002180), 6,7-dimethyl-8-ribityllumazine synthase, chloroplast (InterPro:IPR017420).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? 6,7-dimethyl-8-ribityllumazine synthase / DMRL synthase / lumazine synthase / riboflavin synthase [Arabidopsis thaliana]. Acts in the jasmonic acid signaling pathway.  Source: TAIR, Jun 30, 2015.
Name  ? COI1 SUPPRESSOR1

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT2G44050 0.5kb upstream 0.5kb upstream 2521   true Chr2: 18223713-18226233
AT2G44050 0.5kb upstream 0.5kb upstream 500   false Chr2: 18223713-18224212
AT2G44050 0.5kb downstream 0.5kb downstream 2521   true Chr2: 18224213-18226733
AT2G44050 0.5kb downstream 0.5kb downstream 500   false Chr2: 18226234-18226733
AT2G44050 1.0kb upstream 1.0kb upstream 3021   true Chr2: 18223213-18226233
AT2G44050 1.0kb upstream 1.0kb upstream 1000   false Chr2: 18223213-18224212
AT2G44050 1.0kb downstream 1.0kb downstream 3021   true Chr2: 18224213-18227233
AT2G44050 1.0kb downstream 1.0kb downstream 1000   false Chr2: 18226234-18227233
AT2G44050 3.0kb upstream 3.0kb upstream 5021   true Chr2: 18221213-18226233
AT2G44050 3.0kb upstream 3.0kb upstream 3000   false Chr2: 18221213-18224212
AT2G44050 3.0kb downstream 3.0kb downstream 5021   true Chr2: 18224213-18229233
AT2G44050 3.0kb downstream 3.0kb downstream 3000   false Chr2: 18226234-18229233

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3 Pathways

Data Source: KEGG

Identifier Name
01100 Metabolic pathways
01110 Biosynthesis of secondary metabolites
00740 Riboflavin metabolism

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11 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TIGR GO annotations assigned by TIGR Arabidopsis annotation effort 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139