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Gene : SPX3 A. thaliana

Gene ID  ? AT2G45130
Brief Description  SPX domain protein 3  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? SPX domain gene 3 (SPX3); CONTAINS InterPro DOMAIN/s: SPX, N-terminal (InterPro:IPR004331); BEST Arabidopsis thaliana protein match is: SPX domain gene 1 (TAIR:AT5G20150.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Expression is upregulated in the shoot of cax1/cax3 mutant.  Source: TAIR, Jun 30, 2015.
Name  ? SPX domain gene 3
  • synonyms:
  • ARABIDOPSIS THALIANA SPX DOMAIN GENE 3,
  • ATSPX3

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1 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
AtSPX1 and AtSPX3 play positive roles in plant adaptation to phosphate starvation, and AtSPX3 may have a negative feedback regulatory role in AtSPX1 response to phosphate starvation. 18315545

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT2G45130 0.5kb upstream 0.5kb upstream 1944   true Chr2: 18605910-18607853
AT2G45130 0.5kb upstream 0.5kb upstream 500   false Chr2: 18605910-18606409
AT2G45130 0.5kb downstream 0.5kb downstream 1944   true Chr2: 18606410-18608353
AT2G45130 0.5kb downstream 0.5kb downstream 500   false Chr2: 18607854-18608353
AT2G45130 1.0kb upstream 1.0kb upstream 2444   true Chr2: 18605410-18607853
AT2G45130 1.0kb upstream 1.0kb upstream 1000   false Chr2: 18605410-18606409
AT2G45130 1.0kb downstream 1.0kb downstream 2444   true Chr2: 18606410-18608853
AT2G45130 1.0kb downstream 1.0kb downstream 1000   false Chr2: 18607854-18608853
AT2G45130 3.0kb upstream 3.0kb upstream 4444   true Chr2: 18603410-18607853
AT2G45130 3.0kb upstream 3.0kb upstream 3000   false Chr2: 18603410-18606409
AT2G45130 3.0kb downstream 3.0kb downstream 4444   true Chr2: 18606410-18610853
AT2G45130 3.0kb downstream 3.0kb downstream 3000   false Chr2: 18607854-18610853

Proteins

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0 Pathways

Data Source: KEGG

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Expression

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9 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TAIR GO annotations assigned by TAIR 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016