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Gene : AT2G45500 A. thaliana

Gene ID  ? AT2G45500
Brief Description  AAA-type ATPase family protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, nucleotide binding, ATP binding; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), MIT (InterPro:IPR007330); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G27120.1).  Source: TAIR, Jun 30, 2015.

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT2G45500 0.5kb upstream 0.5kb upstream 4015   true Chr2: 18749352-18753366
AT2G45500 0.5kb upstream 0.5kb upstream 500   false Chr2: 18752867-18753366
AT2G45500 0.5kb downstream 0.5kb downstream 4015   true Chr2: 18748852-18752866
AT2G45500 0.5kb downstream 0.5kb downstream 500   false Chr2: 18748852-18749351
AT2G45500 1.0kb upstream 1.0kb upstream 4515   true Chr2: 18749352-18753866
AT2G45500 1.0kb upstream 1.0kb upstream 1000   false Chr2: 18752867-18753866
AT2G45500 1.0kb downstream 1.0kb downstream 4515   true Chr2: 18748352-18752866
AT2G45500 1.0kb downstream 1.0kb downstream 1000   false Chr2: 18748352-18749351
AT2G45500 3.0kb upstream 3.0kb upstream 6515   true Chr2: 18749352-18755866
AT2G45500 3.0kb upstream 3.0kb upstream 3000   false Chr2: 18752867-18755866
AT2G45500 3.0kb downstream 3.0kb downstream 6515   true Chr2: 18746352-18752866
AT2G45500 3.0kb downstream 3.0kb downstream 3000   false Chr2: 18746352-18749351

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0 Pathways

Data Source: KEGG

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8 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
TrEMBL data set Computationally analysed records, enriched with automatic annotation 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0