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Gene : AT2G45540 A. thaliana

Gene ID  ? AT2G45540
Brief Description  WD-40 repeat family protein / beige-like protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? WD-40 repeat family protein / beige-related; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), Beige/BEACH (InterPro:IPR000409), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G60920.1).  Source: TAIR, Jun 30, 2015.
  • synonyms:
  • BCHC2,
  • Beach-Domain Homolog C2

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT2G45540 0.5kb upstream 0.5kb upstream 15918   true Chr2: 18757489-18773406
AT2G45540 0.5kb upstream 0.5kb upstream 500   false Chr2: 18772907-18773406
AT2G45540 0.5kb downstream 0.5kb downstream 15918   true Chr2: 18756989-18772906
AT2G45540 0.5kb downstream 0.5kb downstream 500   false Chr2: 18756989-18757488
AT2G45540 1.0kb upstream 1.0kb upstream 16418   true Chr2: 18757489-18773906
AT2G45540 1.0kb upstream 1.0kb upstream 1000   false Chr2: 18772907-18773906
AT2G45540 1.0kb downstream 1.0kb downstream 16418   true Chr2: 18756489-18772906
AT2G45540 1.0kb downstream 1.0kb downstream 1000   false Chr2: 18756489-18757488
AT2G45540 3.0kb upstream 3.0kb upstream 18418   true Chr2: 18757489-18775906
AT2G45540 3.0kb upstream 3.0kb upstream 3000   false Chr2: 18772907-18775906
AT2G45540 3.0kb downstream 3.0kb downstream 18418   true Chr2: 18754489-18772906
AT2G45540 3.0kb downstream 3.0kb downstream 3000   false Chr2: 18754489-18757488

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Data Source: KEGG

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9 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TIGR GO annotations assigned by TIGR Arabidopsis annotation effort 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139