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Gene : NGA1 A. thaliana

Gene ID  ? AT2G46870
Brief Description  AP2/B3-like transcriptional factor family protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? NGATHA1 (NGA1); CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT3G61970.1).  Source: TAIR, Jun 30, 2015.
Name  ? NGATHA1

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1 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
Data indicate that transcription factors TCP-NGA regulatory interaction is likely conserved in angiosperms, including important crop species. 25625546


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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT2G46870 0.5kb upstream 0.5kb upstream 2128   true Chr2: 19260406-19262533
AT2G46870 0.5kb upstream 0.5kb upstream 500   false Chr2: 19260406-19260905
AT2G46870 0.5kb downstream 0.5kb downstream 2128   true Chr2: 19260906-19263033
AT2G46870 0.5kb downstream 0.5kb downstream 500   false Chr2: 19262534-19263033
AT2G46870 1.0kb upstream 1.0kb upstream 2628   true Chr2: 19259906-19262533
AT2G46870 1.0kb upstream 1.0kb upstream 1000   false Chr2: 19259906-19260905
AT2G46870 1.0kb downstream 1.0kb downstream 2628   true Chr2: 19260906-19263533
AT2G46870 1.0kb downstream 1.0kb downstream 1000   false Chr2: 19262534-19263533
AT2G46870 3.0kb upstream 3.0kb upstream 4628   true Chr2: 19257906-19262533
AT2G46870 3.0kb upstream 3.0kb upstream 3000   false Chr2: 19257906-19260905
AT2G46870 3.0kb downstream 3.0kb downstream 4628   true Chr2: 19260906-19265533
AT2G46870 3.0kb downstream 3.0kb downstream 3000   false Chr2: 19262534-19265533


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0 Pathways

Data Source: KEGG

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Array Expression

RNA-seq Expression


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11 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139