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Gene : AT3G01340 A. thaliana

Gene ID  ? AT3G01340
Brief Description  Transducin/WD40 repeat-like superfamily protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: intracellular protein transport, membrane budding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781), G-protein beta WD-40 repeat, region (InterPro:IPR020472); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT2G30050.1).  Source: TAIR, Jun 30, 2015.

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI


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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT3G01340 0.5kb upstream 0.5kb upstream 2192   true Chr3: 127303-129494
AT3G01340 0.5kb upstream 0.5kb upstream 500   false Chr3: 128995-129494
AT3G01340 0.5kb downstream 0.5kb downstream 2192   true Chr3: 126803-128994
AT3G01340 0.5kb downstream 0.5kb downstream 500   false Chr3: 126803-127302
AT3G01340 1.0kb upstream 1.0kb upstream 2692   true Chr3: 127303-129994
AT3G01340 1.0kb upstream 1.0kb upstream 1000   false Chr3: 128995-129994
AT3G01340 1.0kb downstream 1.0kb downstream 2692   true Chr3: 126303-128994
AT3G01340 1.0kb downstream 1.0kb downstream 1000   false Chr3: 126303-127302
AT3G01340 3.0kb upstream 3.0kb upstream 4692   true Chr3: 127303-131994
AT3G01340 3.0kb upstream 3.0kb upstream 3000   false Chr3: 128995-131994
AT3G01340 3.0kb downstream 3.0kb downstream 4692   true Chr3: 124303-128994
AT3G01340 3.0kb downstream 3.0kb downstream 3000   false Chr3: 124303-127302


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2 Pathways

Data Source: KEGG

Identifier Name
03013 RNA transport
04141 Protein processing in endoplasmic reticulum

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11 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TIGR GO annotations assigned by TIGR Arabidopsis annotation effort 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139