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Gene : LNG2 A. thaliana

Gene ID  ? AT3G02170
Brief Description  longifolia2  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? LONGIFOLIA2 (LNG2); BEST Arabidopsis thaliana protein match is: longifolia1 (TAIR:AT5G15580.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Encodes LONGIFOLIA2 (LNG2). Regulates leaf morphology by promoting cell expansion in the leaf-length direction. The LNG2 homologue LNG1 (At5g15580) has similar function.  Source: TAIR, Jun 30, 2015.
Name  ? LONGIFOLIA2
  • synonyms:
  • TON1 Recruiting Motif 1,
  • TRM1

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1 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
Results indicate that LONGIFOLIA1 (LNG1) and LNG2 are new components that regulate leaf morphology by positively promoting longitudinal polar cell elongation independently of ROT3 in Arabidopsis [LNG2]. 17038516

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT3G02170 0.5kb upstream 0.5kb upstream 4449   true Chr3: 396012-400460
AT3G02170 0.5kb upstream 0.5kb upstream 500   false Chr3: 399961-400460
AT3G02170 0.5kb downstream 0.5kb downstream 4449   true Chr3: 395512-399960
AT3G02170 0.5kb downstream 0.5kb downstream 500   false Chr3: 395512-396011
AT3G02170 1.0kb upstream 1.0kb upstream 4949   true Chr3: 396012-400960
AT3G02170 1.0kb upstream 1.0kb upstream 1000   false Chr3: 399961-400960
AT3G02170 1.0kb downstream 1.0kb downstream 4949   true Chr3: 395012-399960
AT3G02170 1.0kb downstream 1.0kb downstream 1000   false Chr3: 395012-396011
AT3G02170 3.0kb upstream 3.0kb upstream 6949   true Chr3: 396012-402960
AT3G02170 3.0kb upstream 3.0kb upstream 3000   false Chr3: 399961-402960
AT3G02170 3.0kb downstream 3.0kb downstream 6949   true Chr3: 393012-399960
AT3G02170 3.0kb downstream 3.0kb downstream 3000   false Chr3: 393012-396011

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0 Pathways

Data Source: KEGG

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10 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TAIR GO annotations assigned by TAIR 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139