help  | faq  | software  | ARAPORT

Gene : LCAT3 A. thaliana

Gene ID  ? AT3G03310
Brief Description  lecithin:cholesterol acyltransferase 3  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? lecithin:cholesterol acyltransferase 3 (LCAT3); FUNCTIONS IN: phosphatidylcholine-sterol O-acyltransferase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lecithin:cholesterol acyltransferase (InterPro:IPR003386); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT4G19860.1).  Source: TAIR, Jun 30, 2015.
Name  ? lecithin:cholesterol acyltransferase 3
  • synonyms:
  • ARABIDOPSIS LECITHIN:CHOLESTEROL ACYLTRANSFERASE 3,
  • ATLCAT3

Locus History Displayer

Publication Counts Displayer

0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

Sequence Feature Displayer

Gene Structure Displayer

J Browse Displayer

Overlapping Features Displayer

12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT3G03310 0.5kb upstream 0.5kb upstream 3636   true Chr3: 778568-782203
AT3G03310 0.5kb upstream 0.5kb upstream 500   false Chr3: 781704-782203
AT3G03310 0.5kb downstream 0.5kb downstream 3636   true Chr3: 778068-781703
AT3G03310 0.5kb downstream 0.5kb downstream 500   false Chr3: 778068-778567
AT3G03310 1.0kb upstream 1.0kb upstream 4136   true Chr3: 778568-782703
AT3G03310 1.0kb upstream 1.0kb upstream 1000   false Chr3: 781704-782703
AT3G03310 1.0kb downstream 1.0kb downstream 4136   true Chr3: 777568-781703
AT3G03310 1.0kb downstream 1.0kb downstream 1000   false Chr3: 777568-778567
AT3G03310 3.0kb upstream 3.0kb upstream 6136   true Chr3: 778568-784703
AT3G03310 3.0kb upstream 3.0kb upstream 3000   false Chr3: 781704-784703
AT3G03310 3.0kb downstream 3.0kb downstream 6136   true Chr3: 775568-781703
AT3G03310 3.0kb downstream 3.0kb downstream 3000   false Chr3: 775568-778567

Proteins

Protein Displayer


Function

Gene Ontology Displayer

0 Pathways

Data Source: KEGG

Gene --> Ontology term

Gene --> Pathways


Expression

Plant Ontology Displayer

Bar Efp Browser Displayer

Array Expression

RNA-seq Expression

Co-expression

Save / Export

 

 

 

 



Interactions

Cytoscape Network Displayer


Homology

Homologue Displayer

Phytomine Ortholog Displayer


Stocks

Alelle Table Displayer

Stock Gene Table Displayer


 

Other

8 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TIGR GO annotations assigned by TIGR Arabidopsis annotation effort 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0